Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2528 ATGGAGTTATTGATACATGCCCTTCATGGGATTTTCTATCTCTTGCCCCATGACTTGGACTTTGACCATGCAATGTGTTTAAACTCTATAAGTTGTATGAATATGAATTTTGTTGGTGAAGTTGGTTCCTTCTCTTCTATTCTAGTTTGTTGTGCTTTTATTGAAAGAAAATGTCTTATAAATTTGAACATCTGTCTTGCCTTTCGTGCTTGTTATTATAAGTTCTTAGTATCACTACTTAACCTACTTCAGGGATTTAACATGAATCGTGTACACCAAGAACCAAGCTTCCCTCTTGTTGATCAATGCAAGAACTCCCCTTCAGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGAGCTACATATTTGGAGTGTCATCAGTTTGATTTACATCAAGGCATTGAGCACAACTTTTACTCGTTCCTTAATGGTAGAGGTTTGTGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTACTGTCCCAGCATATGTCCTCCGCCTGCTGCTTTCTTAGGCCCCAAGTGTGCGCTATGGGATTGCCCACGACCTGCCCAAGGGTTGGATTGGTGTGAGGACTACTGTAGCAGTTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGAATCGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGAAAAGATGTTGGTATTCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGAAATAGGAAGCAGAGGTCGTTGCCTGATTATAGTGGACGTGGTTGGCATGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATCAATAAGTATGATGTCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTTGATGGGAAAAAGAGTTCTAAGGCAAAGGTAACAAATGACTCGGTTGCTGATTTACAGAGGCAAATGGGGAGACTGACTGCTGAGTTTCCTGATAATAAACGCTTTGTCAAGGGGAGGACCAAAGTTAACACAAAAGTTGGTATTGGAAATGTTTACCCCTCAGCAAATAGGATCATGCCACCCAATGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGTGGAGAATTTGAGCGAATATTACCTTTAA 1323 41.95 MELLIHALHGIFYLLPHDLDFDHAMCLNSISCMNMNFVGEVGSFSSILVCCAFIERKCLINLNICLAFRACYYKFLVSLLNLLQGFNMNRVHQEPSFPLVDQCKNSPSGVHGMAMNNLEGATYLECHQFDLHQGIEHNFYSFLNGRGLCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGLDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDVCALYRLELKLVDGKKSSKAKVTNDSVADLQRQMGRLTAEFPDNKRFVKGRTKVNTKVGIGNVYPSANRIMPPNGTYDYMLHAQYDYLVENLSEYYL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78603553 78607728 + Tan0007893.2 Tan03g2528 748032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2528 440 PANTHER TRANSCRIPTION FACTOR VOZ1 84 439 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2528 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2528 Tan-Chr3:78603553 Tan05g0925 Tan-Chr5:7440464 1.20E-103 dispersed
Tan03g2527 Tan-Chr3:78603553 Tan03g2528 Tan-Chr3:78603553 1.70E-217 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g2527 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 71.1 6.3e-199 691.0
Tan03g2528 . 84 440 VOZ-9 Transcription Factor Family AT1G28520 69.2 2.4e-142 503.1
Tan05g0925 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0926 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0927 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.9 6.9e-137 485.0
Tan05g0928 . 6 321 VOZ-9 Transcription Factor Family AT1G28520 51.3 3.0e-76 283.5
Tan05g0929 . 6 321 VOZ-9 Transcription Factor Family AT1G28520 51.3 3.0e-76 283.5
Tan05g0925 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan05g0926 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan05g0927 . 11 443 VOZ-9 Transcription Factor Family AT2G42400 50.3 2.1e-108 390.2
Tan03g2527 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 51.1 4.6e-103 372.5
Tan03g2528 . 163 380 VOZ-9 Transcription Factor Family AT2G42400 70.6 6.9e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27101 None None None None Tan TF