Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2549 ATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAAGAAAGTAAAAACCAGCAGTTCAAAACTTGCTAAGGAGAAGTCAAATGCTTTGAAACCGAATAATTTACAAAAAGATTCCTCGAAATTTAAAAATGGTGGTACTAATGGGAGCAGCAAGTCTCTTGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAAACAGCATATCGAGCATATCGTGCCAGGAAAAATTTACGTCGCTTGAAAGGAGCTGTGAGACTGCAGAATCTGACTCAAGGCCACTCTGTTAGAAAGCATGCTACATCTACAATAGGTTACCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGAATTTGTATGGTGACAGAAGGACGACTAAGACAAAAGAGATTGGAGAATCAACGAAAACTTGAGGCTAAGCTTCATGACATAGAGGTGGAGTGGTGTGGTGGTGCAGACACCATGGAGGAGATTCTTTCAAGGATACACGAGAGAGAAGAAGCAGCTGTTAAGCGTGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCTCGTCCATGGGAAAGCCGCATACCATCTCAGTTAGTTAGTCCGAAGAAATCGACAATTAGGCAATCGAACAAAGTCAGTAAGAAAAACTCACCATCTCCAAAAGCACGAGTTTTCGTTAAGCCTCCTTCCCCAAATGGGAAATCAACTCCAAAGGCTCGGAGGTTGTCTTATCCAGCAACTGAGAAAATCGAGAAACTGGCTACAGAAGAAAAGGGCGTCAAGAAAAGTGTTAAAGATGACGAAGGAAACACGAAGCAAGAAGAAACAGTGTCTTGA 939 43.13 MGSGDWFKTVIRLKKVKTSSSKLAKEKSNALKPNNLQKDSSKFKNGGTNGSSKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGAVRLQNLTQGHSVRKHATSTIGYLHSWSNIQAQIRARRICMVTEGRLRQKRLENQRKLEAKLHDIEVEWCGGADTMEEILSRIHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRIPSQLVSPKKSTIRQSNKVSKKNSPSPKARVFVKPPSPNGKSTPKARRLSYPATEKIEKLATEEKGVKKSVKDDEGNTKQEETVS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78698596 78704359 + Tan0005666.1 Tan03g2549 748053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2549 312 ProSiteProfiles IQ motif profile. 82 111 - -
Tan03g2549 312 PANTHER IQ-DOMAIN 5-RELATED 40 263 - -
Tan03g2549 312 MobiDBLite consensus disorder prediction 23 55 - -
Tan03g2549 312 MobiDBLite consensus disorder prediction 231 312 - -
Tan03g2549 312 Gene3D - 60 105 - -
Tan03g2549 312 MobiDBLite consensus disorder prediction 278 312 - -
Tan03g2549 312 MobiDBLite consensus disorder prediction 18 55 - -
Tan03g2549 312 ProSiteProfiles IQ motif profile. 60 88 - -
Tan03g2549 312 MobiDBLite consensus disorder prediction 231 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2549 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0850 Tan-Chr1:8243214 Tan03g2549 Tan-Chr3:78698596 1.70E-57 dispersed
Tan03g2549 Tan-Chr3:78698596 Tan09g0678 Tan-Chr9:55436653 3.70E-35 dispersed
Tan03g2549 Tan-Chr3:78698596 Tan11g0812 Tan-Chr11:6799965 2.00E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37