Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2576 ATGGCTGAGGTTCACAGTAGCAACAAGGGTGGAATTAAGCTTTTTGGCACTATGATCACTTTACAGACGATAAAAATCAAGGAGGAGCCGGAGAAAGGCGGCGGTGGTGATCAAACAGAGATGAAGAGGCCGGAAAAAATAATTCCATGTCCAAGATGTAAGAGCATGGAAACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCAAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCCGGTGGCGCGCTACGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAACCAAGCCTCCGCCGCCGAATTGCCGGAGCCTTTCCGGCGAGCTCCCGGAGGATTATGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTCAATTGGATGCGGTGGAGGGGTGGCATCTCACGGTGGCAGAACAGGATTTTCCCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 507 50.3 MAEVHSSNKGGIKLFGTMITLQTIKIKEEPEKGGGGDQTEMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPPNCRSLSGELPEDYGQLYDAASGIIHQLQLDAVEGWHLTVAEQDFPQVFPLKRQKIIGQHGQTS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78881393 78882301 - Tan0008559.1 Tan03g2576 748080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2576 168 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g2576 168 PANTHER CYCLIC DOF FACTOR 2 30 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Tan03g2576 168 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan03g2576 168 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2576 Tan-Chr3:78881393 Tan10g1676 Tan-Chr10:37944187 5.40E-33 dispersed
Tan03g2576 Tan-Chr3:78881393 Tan05g2493 Tan-Chr5:76206244 1.80E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27105 PF02701 zf-Dof 2.30E-31 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2576 - - - 0.0