Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2588 ATGGTCTTGACCACACAATGGCTTTCCTCAGCCACAGTCATCTCTCGCTTTCGTTTTCCCTCCTCTTATTTTTTGTTTACAATCTTGGCAATGGAAGTTGTAAAGCTAAAAGTGATTCTATTGCTGTTCGTCCTCATCTGGGTGGTCTCTGCTTCAGACAGTCATTTGTCACCGAAAGGAGTAAACTATGAAGTGGCGGCTTTGATGTCAATGAAGAGTAGGATAAGGGACGAAAGGAGAGTGATGGAAGGATGGGACATTAATTCGGTTGACCCATGCACATGGAATATGGTTGCTTGCTCTTATGAGGGCTTTGTCATTTCTCTTGAGATGCCAAATATGGGCTTAGCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCACCTTCGAACAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGGACTTTCAGAGCTTCAGACTCTTGACCTTTCCAACAACCAGTTTGTAGGAGGCATTCCAAGTTCTTTGGGGTTTCTTACTCATTTAAATTACTTGAAGCTTAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTTACCTTCTTTGTTGCAGGGAATAGCTTCCTTTGCGCATCTTCATCATCTATAGTTTGTGGAGTAGCTTCAAAACCAGCTAACGAAACTGGTTCGCCTCAAAAAGATAATGGCCATCATCACTTGGTTCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTATGTGCAGCAAGATTATGAATTTGATATAGGTCATTTGAAGAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTATACTGGAGAAGTGCAGTTTCAGACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACGCCAGATGAGAGGTTGCTTGTTTATCCTTATATGCCAAATGGGAGTGTCGCTGACCGCCTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGAAGATTGTGTATTGCCCTTGGCGCAGCACGTGGACTTCTATACTTGCATGAACAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAGGCCGTGGTCGGGGATTTTGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCTCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACAGATGTTTTTGGATTTGGCATATTGGTTTTGGAACTCTTAACAGGGCAAAAAGCTCTAGATGCTGGCAATGGTCAGGTTCGAAAGGGAATGATTCTCGAATGGGTTAGAACACTACATGAGGAGAAGAAATTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAGCTCCGACCGAAGATGTCCGAGATCTTGAAGGTTCTAGAAGGTCTCGTAGGACAGTCAAGCCAAATGGAGGAATCACCAGGTGGAGCAAGTCTATATGAGGATAGAGCTCACAGTTTCTCCAGAAATTACAGTGATATCTATGAAGAATCTTCATTCGTCGTCGAAGCCATGGAGCTCTCGGGACCTCGGTGA 1887 43.08 MVLTTQWLSSATVISRFRFPSSYFLFTILAMEVVKLKVILLLFVLIWVVSASDSHLSPKGVNYEVAALMSMKSRIRDERRVMEGWDINSVDPCTWNMVACSYEGFVISLEMPNMGLAGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGGLSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLTFFVAGNSFLCASSSSIVCGVASKPANETGSPQKDNGHHHLVLSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLCIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQVRKGMILEWVRTLHEEKKLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKVLEGLVGQSSQMEESPGGASLYEDRAHSFSRNYSDIYEESSFVVEAMELSGPR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 79006919 79011952 + Tan0020905.2 Tan03g2588 748092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2588 628 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 61 213 - -
Tan03g2588 628 Gene3D Transferase(Phosphotransferase) domain 1 381 589 - -
Tan03g2588 628 Gene3D Ribonuclease Inhibitor 61 226 IPR032675 -
Tan03g2588 628 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524(InterPro)
Tan03g2588 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2588 628 Gene3D Phosphorylase Kinase; domain 1 274 380 - -
Tan03g2588 628 SUPERFAMILY L domain-like 63 219 - -
Tan03g2588 628 Pfam Protein kinase domain 308 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2588 628 FunFam Somatic embryogenesis receptor-like kinase 1 381 592 - -
Tan03g2588 628 SUPERFAMILY Protein kinase-like (PK-like) 287 578 IPR011009 -
Tan03g2588 628 ProSiteProfiles Protein kinase domain profile. 305 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2588 628 SMART serkin_6 305 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2588 628 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515(InterPro)
Tan03g2588 628 Pfam Leucine Rich Repeat 154 175 IPR001611 GO:0005515(InterPro)
Tan03g2588 628 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515(InterPro)
Tan03g2588 628 FunFam Somatic embryogenesis receptor kinase 1 274 380 - -
Tan03g2588 628 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 39 628 - -
Tan03g2588 628 Pfam Leucine rich repeat N-terminal domain 62 101 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2588 Tan-Chr3:79006919 Tan11g0395 Tan-Chr11:3166273 2.90E-148 dispersed
Tan03g2587 Tan-Chr3:79006919 Tan03g2588 Tan-Chr3:79006919 3.70E-264 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67402 PF00069 Pkinase 2.60E-44 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2588 - - - 0.0