Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2620 ATGTCTGGCTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGCCAAGTCACTTTCTGTAAGAGACGAAATGGGCTGCTCAAAAAGGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGTCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGATATAAGAAGGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTATCAGCAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGTTGGGTGAATCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTGGAGAGTAAACTGGAGAAAGGAATTAGTAGAATTAGGTCCAAAAAGAATGAACTCCTGTTTGCTGAAATTGAGTATATGAGAAAAAGGGAACTTGATTTGCACAACAACAATCAGCTTCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAATATGATGGGAGGAGAATTTGAACTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCAACAGTATCCACGCCAAGACAACATGTCTCTTCAGTTAGTTTAA 690 40.58 MSGSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKRELDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMSLQLV 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 79270654 79277822 + Tan0017820.1 Tan03g2620 748124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2620 229 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 208 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan03g2620 229 FunFam agamous-like MADS-box protein AGL11 21 104 - -
Tan03g2620 229 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 Pfam K-box region 91 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan03g2620 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 Gene3D - 21 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan03g2620 229 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan03g2620 229 SMART madsneu2 9 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan03g2620 229 Coils Coil 132 152 - -
Tan03g2620 229 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3872 Tan-Chr1:103600486 Tan03g2620 Tan-Chr3:79270654 4.70E-37 dispersed
Tan03g1763 Tan-Chr3:73460082 Tan03g2620 Tan-Chr3:79270654 1.20E-35 dispersed
Tan03g2620 Tan-Chr3:79270654 Tan10g2028 Tan-Chr10:64501337 6.90E-71 dispersed
Tan06g1513 Tan-Chr6:21324139 Tan03g2620 Tan-Chr3:79270654 9.50E-20 dispersed
Tan03g2620 Tan-Chr3:79270654 Tan03g2621 Tan-Chr3:79271000 1.10E-121 tandem
Tan05g0636 Tan-Chr5:4727046 Tan03g2620 Tan-Chr3:79270654 2.40E-71 transposed
Tan03g2620 Tan-Chr3:79270654 Tan05g2545 Tan-Chr5:76781528 3.00E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27111 PF01486 K-box 2.50E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2620 K09264 - csv:101221430 408.683