Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2673 ATGGCGGGACTGAGAAAACTGGCGCAATTGAAACCCATAGCCGATGAAGCATTGGCCGGAACAGTTTTCTTAGGGAAGTTTCTCTGTGGCCTTCATGTCGCTAACACGTACGTCTGCACCGCCGCTCTCACCTACGGTCCCAGCATGCTCCCTACTCTGAATCTAACCGGCGATTTCATCTTGGCCGAACGAATCTCCACTCGCTTTGGCAGAGTCAGAGTCGGAGACATTGTCCTCGTCAGGTCCCCTGAAAACCCTCGCAAAGTAATGGCGAAGCGCTTGATGGGCATGGAGGGTGATTCTGTTACCTACGTTGTTGACCCGAAGAACAGTGATTGGTGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATTTATGATTCAAAGGATTCAAGACATTTTGGGGCCGTCCCATATGGTCTTCTGCAAGGGAAGGTATTCTGGAGGATGTGGCCACCTAAAAGTTTCGGACCATTAGAGAAGAGAAGATCGAATGAGACAATCTTGTGA 528 49.43 MAGLRKLAQLKPIADEALAGTVFLGKFLCGLHVANTYVCTAALTYGPSMLPTLNLTGDFILAERISTRFGRVRVGDIVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNSDWCETVVVPKGHVWIEGDNIYDSKDSRHFGAVPYGLLQGKVFWRMWPPKSFGPLEKRRSNETIL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 79763330 79765685 + Tan0021802.1 Tan03g2673 748177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2673 175 Gene3D Umud Fragment, subunit A 34 170 - -
Tan03g2673 175 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 167 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
Tan03g2673 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Tan03g2673 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Tan03g2673 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Tan03g2673 175 CDD S26_SPase_I 46 152 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Tan03g2673 175 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
Tan03g2673 175 Pfam Signal peptidase, peptidase S26 32 105 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Tan03g2673 175 Pfam Signal peptidase, peptidase S26 115 157 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Tan03g2673 175 FunFam Inner membrane protease subunit 1 35 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2673 Tan-Chr3:79763330 Tan03g2678 Tan-Chr3:79763330 7.30E-89 dispersed
Tan03g2673 Tan-Chr3:79763330 Tan03g2674 Tan-Chr3:79763330 5.70E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2673 K09647 - csv:101209167 321.242