Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2676 ATGCTCCCTACTCTGAATCTAACCGGCGATTTCATCTTGGCCGAACGAATCTCCACTCGCTTTGGCAGAGTCAGAGTCGGAGACATTGTCCTCGTCAGGTCCCCTGAAAACCCTCGCAAAGTAATGGCGAAGCGCTTGATGGGCATGGAGGGTGATTCTGTTACCTACGTTGTTGACCCGAAGAACAGTGATTGGTGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATTTATGATTCAAAGGATTCAAGACATTTTGGGGCCGTCCCATATGGTCTTCTGCAAGGGAAGGTATTCTGGAGGATGTGGCCACCTAAAAGTTTCGGACCATTAGAGAAGAGAAGATCGAATGAGACAATCTTGTGA 384 47.66 MLPTLNLTGDFILAERISTRFGRVRVGDIVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNSDWCETVVVPKGHVWIEGDNIYDSKDSRHFGAVPYGLLQGKVFWRMWPPKSFGPLEKRRSNETIL 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 79763330 79765685 + Tan0021802.4 Tan03g2676 748180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2676 127 SUPERFAMILY LexA/Signal peptidase 1 117 IPR036286 -
Tan03g2676 127 CDD S26_SPase_I 1 104 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Tan03g2676 127 Pfam Signal peptidase, peptidase S26 67 109 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Tan03g2676 127 Pfam Signal peptidase, peptidase S26 1 57 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Tan03g2676 127 Gene3D Umud Fragment, subunit A 1 122 - -
Tan03g2676 127 PRINTS Bacterial leader peptidase 1 (S26A) family signature 42 54 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Tan03g2676 127 PRINTS Bacterial leader peptidase 1 (S26A) family signature 71 90 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Tan03g2676 127 FunFam Inner membrane protease subunit 1 1 116 - -
Tan03g2676 127 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 119 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2676 Tan-Chr3:79763330 Tan03g2678 Tan-Chr3:79763330 3.00E-60 dispersed
Tan03g2675 Tan-Chr3:79763330 Tan03g2676 Tan-Chr3:79763330 2.70E-35 tandem
Tan03g2676 Tan-Chr3:79763330 Tan03g2677 Tan-Chr3:79763330 1.70E-42 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2676 K09647 - csv:101209167 241.891