Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g2727 | ATGGCTTCCAGGTCCAGCAGTCATAGCAAAACGCGAGTGGGGAGGTACGAGTTGGGACGAACCCTTGGAGAAGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGTGAGACAGGGGAGAACGTGGCCATCAAAATCCTCGACAAAGAGAAGATTCTCAAGCACAAGATGATAGGGCAGATTAAACGTGAAATATCAACAATGAAACTCATTAGACATCCAAATGTCATACGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTCACTGGGGGAGAACTGTTCGACAAAATTGCAAGTAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGAGGTGTTTGTCATCGGGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGTGTTCTAAAAGTTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAACAACAAAGGCTACTATGGAGCAAAGGCTGACCTATGGTCGTGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAGTCCAGTCTCATGGCATTGTACAAAAGGATATTCAAGGCTGACTTCACGTGTCCTCCATGGTTTTCCTCTAGTGCAAAGAAGTTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAGGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGGCACCCGCATTTGAAAATGCTGAAATCAGCCTTGATGACGTTGATGACATCTTTAATGAATCAGGGGCCACTCATAACCTTGTTGTTGAGAGGAGAGAAGATAGACTTGCATCACCTGCGTCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAATCTTGCCACTCTTTTCGAGAAGCAAATGGGGCTAATTAAACGTGAAACGAGATTCACATCCAATTGTTCTGCAGATGAAATAGTTTCCAAGATCGAAAAGACTGCAGTGCCTTTGGGTTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAGAAAACAGGACGTAAAGGTCATTTATCAATTGCAACAGAGATTTTTCAGGTTGCCCCTTCGTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGCGATACTTTAGAATTTCACAAGTTCTATAATAACCTCTCAACTGGATTGAAAGATATTGTATGGAGATGCGGAGACGAGATGGAGCAGGAAAAGTAA | 1353 | 42.57 | MASRSSSHSKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEKILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEESSLMALYKRIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKAPAFENAEISLDDVDDIFNESGATHNLVVERREDRLASPASPVTMNAFELISKSRGLNLATLFEKQMGLIKRETRFTSNCSADEIVSKIEKTAVPLGFDVKINNFKMKLQGEKTGRKGHLSIATEIFQVAPSLHMVELRKAGGDTLEFHKFYNNLSTGLKDIVWRCGDEMEQEK | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 80210878 | 80216267 | + | Tan0006747.1 | Tan03g2727 | 748231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g2727 | 450 | FunFam | Non-specific serine/threonine protein kinase | 315 | 441 | - | - | |
Tan03g2727 | 450 | ProSiteProfiles | Protein kinase domain profile. | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan03g2727 | 450 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 95 | - | - | |
Tan03g2727 | 450 | FunFam | Non-specific serine/threonine protein kinase | 7 | 95 | - | - | |
Tan03g2727 | 450 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan03g2727 | 450 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 5 | 425 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Tan03g2727 | 450 | Pfam | NAF domain | 318 | 377 | IPR004041 | GO:0007165(InterPro) | |
Tan03g2727 | 450 | Gene3D | Transferase(Phosphotransferase) domain 1 | 96 | 279 | - | - | |
Tan03g2727 | 450 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 279 | IPR011009 | - | |
Tan03g2727 | 450 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524(InterPro) | |
Tan03g2727 | 450 | CDD | STKc_SnRK3 | 15 | 270 | - | - | |
Tan03g2727 | 450 | CDD | CIPK_C | 322 | 437 | - | - | |
Tan03g2727 | 450 | Gene3D | Kinase associated domain 1, KA1 | 316 | 441 | - | - | |
Tan03g2727 | 450 | ProSiteProfiles | NAF domain profile. | 316 | 340 | IPR018451 | GO:0007165(InterPro) | |
Tan03g2727 | 450 | FunFam | Non-specific serine/threonine protein kinase | 9 | 311 | - | - | |
Tan03g2727 | 450 | Pfam | Protein kinase domain | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan03g2727 | 450 | SMART | serkin_6 | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g2727 | Tan-Chr3:80210878 | Tan10g0068 | Tan-Chr10:1022351 | 6.10E-180 | dispersed | |
Tan11g0629 | Tan-Chr11:5528399 | Tan03g2727 | Tan-Chr3:80210878 | 4.50E-30 | dispersed | |
Tan04g0518 | Tan-Chr4:4287980 | Tan03g2727 | Tan-Chr3:80210878 | 1.30E-09 | transposed | |
Tan06g2170 | Tan-Chr6:71694659 | Tan03g2727 | Tan-Chr3:80210878 | 1.10E-71 | transposed | |
Tan03g2727 | Tan-Chr3:80210878 | Tan05g2668 | Tan-Chr5:78077264 | 1.20E-215 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67405 | PF00069 | Pkinase | 4.90E-75 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g2727 | - | - | - | 0.0 |