Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2727 ATGGCTTCCAGGTCCAGCAGTCATAGCAAAACGCGAGTGGGGAGGTACGAGTTGGGACGAACCCTTGGAGAAGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGTGAGACAGGGGAGAACGTGGCCATCAAAATCCTCGACAAAGAGAAGATTCTCAAGCACAAGATGATAGGGCAGATTAAACGTGAAATATCAACAATGAAACTCATTAGACATCCAAATGTCATACGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTCACTGGGGGAGAACTGTTCGACAAAATTGCAAGTAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGAGGTGTTTGTCATCGGGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGTGTTCTAAAAGTTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAACAACAAAGGCTACTATGGAGCAAAGGCTGACCTATGGTCGTGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAGTCCAGTCTCATGGCATTGTACAAAAGGATATTCAAGGCTGACTTCACGTGTCCTCCATGGTTTTCCTCTAGTGCAAAGAAGTTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAGGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGGCACCCGCATTTGAAAATGCTGAAATCAGCCTTGATGACGTTGATGACATCTTTAATGAATCAGGGGCCACTCATAACCTTGTTGTTGAGAGGAGAGAAGATAGACTTGCATCACCTGCGTCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAATCTTGCCACTCTTTTCGAGAAGCAAATGGGGCTAATTAAACGTGAAACGAGATTCACATCCAATTGTTCTGCAGATGAAATAGTTTCCAAGATCGAAAAGACTGCAGTGCCTTTGGGTTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAGAAAACAGGACGTAAAGGTCATTTATCAATTGCAACAGAGATTTTTCAGGTTGCCCCTTCGTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGCGATACTTTAGAATTTCACAAGTTCTATAATAACCTCTCAACTGGATTGAAAGATATTGTATGGAGATGCGGAGACGAGATGGAGCAGGAAAAGTAA 1353 42.57 MASRSSSHSKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEKILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEESSLMALYKRIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKAPAFENAEISLDDVDDIFNESGATHNLVVERREDRLASPASPVTMNAFELISKSRGLNLATLFEKQMGLIKRETRFTSNCSADEIVSKIEKTAVPLGFDVKINNFKMKLQGEKTGRKGHLSIATEIFQVAPSLHMVELRKAGGDTLEFHKFYNNLSTGLKDIVWRCGDEMEQEK 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 80210878 80216267 + Tan0006747.1 Tan03g2727 748231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2727 450 FunFam Non-specific serine/threonine protein kinase 315 441 - -
Tan03g2727 450 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2727 450 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Tan03g2727 450 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Tan03g2727 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2727 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 425 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan03g2727 450 Pfam NAF domain 318 377 IPR004041 GO:0007165(InterPro)
Tan03g2727 450 Gene3D Transferase(Phosphotransferase) domain 1 96 279 - -
Tan03g2727 450 SUPERFAMILY Protein kinase-like (PK-like) 13 279 IPR011009 -
Tan03g2727 450 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Tan03g2727 450 CDD STKc_SnRK3 15 270 - -
Tan03g2727 450 CDD CIPK_C 322 437 - -
Tan03g2727 450 Gene3D Kinase associated domain 1, KA1 316 441 - -
Tan03g2727 450 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165(InterPro)
Tan03g2727 450 FunFam Non-specific serine/threonine protein kinase 9 311 - -
Tan03g2727 450 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2727 450 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2727 Tan-Chr3:80210878 Tan10g0068 Tan-Chr10:1022351 6.10E-180 dispersed
Tan11g0629 Tan-Chr11:5528399 Tan03g2727 Tan-Chr3:80210878 4.50E-30 dispersed
Tan04g0518 Tan-Chr4:4287980 Tan03g2727 Tan-Chr3:80210878 1.30E-09 transposed
Tan06g2170 Tan-Chr6:71694659 Tan03g2727 Tan-Chr3:80210878 1.10E-71 transposed
Tan03g2727 Tan-Chr3:80210878 Tan05g2668 Tan-Chr5:78077264 1.20E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67405 PF00069 Pkinase 4.90E-75 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2727 - - - 0.0