Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2736 ATGAGGCTTTCAAATGCTGGTTTTAGTCCTCAGGCTCCGGAAGGGGAGAAGAGAGTCCTTAACTCGGAGCTTTGGCATGCATGTGCCGGCCCTCTTGTTTCTCTACCTGCTGTAGGAAGTCGGGTTGTTTACTTCCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTGGATGCCCATATACCTAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACCATGCATGCAGATGTTGAGACGGATGAAGTTTATGCCCAGATGACCTTGCAACCACTCAGTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAATTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGATACAAGTACACATGGAGGATTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTGTTTCCTCCATTGGACTTTACTCAGCAGCCACCTGCTCAGGAGTTGATTGCAAGGGATCTGCATGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAAAGGCATCTCCTTACAACTGGATGGAGTGTGTTTGTAAGTGCCAAGAGGCTTGTTGCTGGTGATTCCGTGATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAATCGGCCACAGACGGTGATGCCCTCATCGGTTTTGTCTAGTGACAGCATGCACTTAGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCATCAGAGTTCATTATACCTCTGGCCAAGTATGTCAAAGCTGTGTACCATACCCGCGTTTCAGTCGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGTGTTCGCCGTTACATGGGCACTATTACTGGCATCAGTGATTTAGATCCTGCCCGGTGGCCTAACTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGAGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTAACGACTTTCCCGATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCATCTGGATTGCCCTCTTTCCACGGTCTCAAAGAGGATGATTTGGGATTGAACTCTCAACTAATGTGGCTACGGGGAGATGCTCTAGATCGTGGAATTCAACCTCTGAACTTCCATGGAATTGGAGTCGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTGCAGGAGATGAGAACTGTAGATCCTGCTAAGGCGCAGGCGGCATCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGGCCTGCTACTTTCATGCCACCTCAAATGTTGCAGCAGCCTCAGCCTCAGCCTCAACAAACCTTTCTTCAAGGTGATCATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAACCCAGCCTACTGTTCTTCAGCAGGAGATAAAACATCAAACATTCAACAACCAGCAGCAGCCACAACAGCAGCAACAACAGCAACAGCATCAGCAACAGCAACAGCAACAGCCACAACAGCAGCAACAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTAGCATCTCTACAATGTCACAGTTTGGTTCTGCATCCCAATCCCAAGCCCAATCCCTGCAAACTATTCCTTCATTATGCAGGCAGCAGAGTTTTTCTGATTCAAATGCCAACCATGTGACAAGTCCTATCATTTCACCATTGCACAGCCTGTTAGGTTCATTTCCACAAGATGAATCATCTCATTTGCTTAATCTGCCTAGAACCAACCCCATGATACATTCATCTACGTGGCCGTCAAAGCGAGCTGCAGTTGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTCCCCAAGGGGAAAATATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTCATTGCCGCCTTTTCCTGGTAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGTATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATGCCGTTTTCGTCTAATTATGTGAATACTGCCGGTACCAACTTCTCTGCCAATCCAACTGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAATCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTTAGTAGCTACCATCAGTTACGCAGTGAGCTCGCTCACATGTTCAGTCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGTGTGTGGTGTATCAAAATACTCTCACCACAGGAAGTGCAGGAGATGGGCAAACGAGGCCTAGAGCTCTTGAACTCGGTCCCGATTCAGAGGCTCTCGAATGGCAGTTGTGATAACTATGCCAACAGACAGGAGTCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2763 47.09 MRLSNAGFSPQAPEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFHGLKEDDLGLNSQLMWLRGDALDRGIQPLNFHGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMPPQMLQQPQPQPQQTFLQGDHENQHLSHSQAQTQPTVLQQEIKHQTFNNQQQPQQQQQQQQHQQQQQQQPQQQQQQPQQQVFDHQQIPSSISTMSQFGSASQSQAQSLQTIPSLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSHLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLPQGENMGTTQTNISQNAISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAMPFSSNYVNTAGTNFSANPTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 80297074 80303712 - Tan0016370.1 Tan03g2736 748240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2736 920 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
Tan03g2736 920 MobiDBLite consensus disorder prediction 474 515 - -
Tan03g2736 920 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan03g2736 920 Gene3D - 783 875 - -
Tan03g2736 920 Gene3D - 291 363 - -
Tan03g2736 920 SUPERFAMILY CAD & PB1 domains 778 861 - -
Tan03g2736 920 ProSiteProfiles PB1 domain profile. 786 870 IPR053793 -
Tan03g2736 920 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Tan03g2736 920 FunFam Auxin response factor 781 875 - -
Tan03g2736 920 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Tan03g2736 920 MobiDBLite consensus disorder prediction 490 515 - -
Tan03g2736 920 MobiDBLite consensus disorder prediction 527 565 - -
Tan03g2736 920 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Tan03g2736 920 Pfam AUX/IAA family 783 875 IPR033389 -
Tan03g2736 920 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 877 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan03g2736 920 FunFam Auxin response factor 125 229 - -
Tan03g2736 920 FunFam Auxin response factor 291 363 - -
Tan03g2736 920 Gene3D - 125 228 IPR015300 -
Tan03g2736 920 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2736 Tan-Chr3:80297074 Tan08g0003 Tan-Chr8:204155 1.10E-148 dispersed
Tan01g4996 Tan-Chr1:115689728 Tan03g2736 Tan-Chr3:80297074 1.00E-176 transposed
Tan03g2524 Tan-Chr3:78575711 Tan03g2736 Tan-Chr3:80297074 1.30E-94 transposed
Tan08g0912 Tan-Chr8:12853855 Tan03g2736 Tan-Chr3:80297074 4.80E-170 transposed
Tan11g1469 Tan-Chr11:13381373 Tan03g2736 Tan-Chr3:80297074 1.20E-91 transposed
Tan11g1470 Tan-Chr11:13400344 Tan03g2736 Tan-Chr3:80297074 1.90E-144 transposed
Tan03g2736 Tan-Chr3:80297074 Tan05g2676 Tan-Chr5:78180676 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27123 PF02309 AUX_IAA 1.40E-07 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2736 K14486 - csv:101210406 1649.8