Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2780 ATGGCGCTTGTTATGCACAAAGATTCATCAAACAAACAGATGGATACAAGCAAATACGTACGGTATACTCCTGAACAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCAAAGCCCAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAACATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGGGAGAAGCAGAGGAAGGAATCTTCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCTATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTGGTGTATGAGAATGGATATATGCGCCAGCAGCTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTTGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCACGAGCCTGTGGTCTCGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTTAAAGATCGCCTTTCATGGTATCGTGACTGTCGCTGTCTTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACCTATGCTCCAACAACATTAGCAGCAGCACGTGACTTTTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAGAGGTCATTAACTTCTTCAAGTGGTGGCCCAGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGCGGTGGATCGATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACAATTGCTGCATTGCGTCACATTAGACAAATTGCTCAAGAGACTAATGGAGAGATTCAATATAGTGGGGGACGTCAACCAGCTGTCTTACGAACGTTTAGTCAGAAACTCTGCAGGGGTTTCAACGATGCTGTTAATGGGTTTGCGGATGATGGTTGGTCACCTATGGGCAGTGATGGTTTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAATTCCCTGGATCCCAGTATAACACGTCTATGTATCCCTCTTTTGGTGGAGTGATGTGCGCAAAAGCATCGATGTTGCTTCAGAATGTCCCCCCTGCGTTGCTTGTTCGTTTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCCGCCAGTTTAAAGGCCAGTCCATATGCCGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAGGTTATTTTGCCTCTTGCTCATACCGTGGAGCACGAGGAGTTTCTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCCCCCGAAGACGTTGCTTTGGCTGGACGAGATATGTACTTGTTGCAGCTCTGTAGTGGGGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCCCCTATAGATGAATCTTTTGCTGATGATGCTCCTCTACTCCCTTCCGGGTTTCGTGTCATACCGCTGGATCCAAAAACGCAGGATGAACCCACTGCTGCTCGAACATTGGATTTGGCCTCTACTTTGGAAGTTGGTGCCAACGGTTCACGTTCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTAGGTCAGTCTTGACTATTGCCTTCCAGTTCACTTTTGAGAATCACTTGCGCGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTGGGGTCTGTTCAGAGGGTTGCTATGGCCATTGCCCCATCACGGTTGAGTTCCAATATGGGACTAAAGCCCCTTCCTGGTTCTCCTGAAGCTCTTACTTTGGCACGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAGCTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGCAGCTCTGGCATCACTCAGATGCAATCATGTGTTGCTCCGTCAAAACCAACGCATCTGCTGTATTCACCTTTGCCAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGATGAAGCGGGTCGGAAGATCCTCTGTTCTGAGTTCCCCAAAATAATGCAGCAGGGATTTGCAAATCTGCCATCGGGTATTTGCGTATCCAGCATGGGTCGTCCCATTTCTTACGAGCAAGCCGTTGCCTGGAAGGTTCTCAATGATGATGATTCCAATCATTGTCTAGCTTTCATGTTCTTGAACTGGTCTTTTGTGTGA 2544 47.56 MALVMHKDSSNKQMDTSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTSSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQYSGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANKFPGSQYNTSMYPSFGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTQDEPTAARTLDLASTLEVGANGSRSAGETDLSSYNLRSVLTIAFQFTFENHLRENVAAMARQYVRSVVGSVQRVAMAIAPSRLSSNMGLKPLPGSPEALTLARWICRSYRIHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICVSSMGRPISYEQAVAWKVLNDDDSNHCLAFMFLNWSFV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 80801218 80807217 - Tan0018969.2 Tan03g2780 748284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2780 847 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Tan03g2780 847 CDD START_ArGLABRA2_like 161 377 - -
Tan03g2780 847 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Tan03g2780 847 Pfam MEKHLA domain 702 846 IPR013978 -
Tan03g2780 847 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Tan03g2780 847 MobiDBLite consensus disorder prediction 123 160 - -
Tan03g2780 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 847 IPR044830 GO:0003700(InterPro)
Tan03g2780 847 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
Tan03g2780 847 Gene3D - 9 85 - -
Tan03g2780 847 MobiDBLite consensus disorder prediction 123 157 - -
Tan03g2780 847 SUPERFAMILY Bet v1-like 167 378 - -
Tan03g2780 847 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Tan03g2780 847 CDD bZIP 70 109 - -
Tan03g2780 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Tan03g2780 847 Gene3D - 200 384 IPR023393 -
Tan03g2780 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Tan03g2780 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Tan03g2780 847 Coils Coil 83 107 - -
Tan03g2780 847 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2780 Tan-Chr3:80801218 Tan05g2703 Tan-Chr5:78865713 0.00E+00 dispersed
Tan03g2779 Tan-Chr3:80801218 Tan03g2780 Tan-Chr3:80801218 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27126 PF01852 START 1.80E-49 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2780 K09338 - csv:101210154 1623.6