Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2781 ATGCACAAATCAAATCAAGTTTCGCGTGGTGTGCACTACAACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAACAAAAGTACTCTGAATCGCAGCATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCGTGACAACCCCAAGTCAGTATTTAACACCTCCACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTTCTCCTTATGATGCTCAACCTTATCCTCCACAGCCCTATGGTGGGCAACCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCATCAGGTGATAAATCACAGCCCAATATAAATCTGAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA 663 42.99 MHKSNQVSRGVHYNPMTSSVHDYSDNGEADEQQKYSESQHHSSSVINGLNQPSVTTPSQYLTPPQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSQPNINLNSDRSDLASSEN 220
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 80816904 80822365 - Tan0020729.1 Tan03g2781 748285
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2781 220 MobiDBLite consensus disorder prediction 178 220 - -
Tan03g2781 220 ProSiteProfiles NF-YA/HAP2 family profile. 126 186 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 SMART cbf3 125 186 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 MobiDBLite consensus disorder prediction 144 162 - -
Tan03g2781 220 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 210 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan03g2781 220 ProSitePatterns NF-YA/HAP2 subunit signature. 131 151 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Tan03g2781 220 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 128 183 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 MobiDBLite consensus disorder prediction 143 162 - -
Tan03g2781 220 PRINTS CCAAT-binding transcription factor subunit B signature 129 151 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 PRINTS CCAAT-binding transcription factor subunit B signature 160 183 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 MobiDBLite consensus disorder prediction 1 23 - -
Tan03g2781 220 Gene3D - 126 187 - -
Tan03g2781 220 MobiDBLite consensus disorder prediction 185 220 - -
Tan03g2781 220 MobiDBLite consensus disorder prediction 1 67 - -
Tan03g2781 220 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2781 Tan-Chr3:80816904 Tan06g0580 Tan-Chr6:4461910 2.40E-28 dispersed
Tan03g2781 Tan-Chr3:80816904 Tan07g0753 Tan-Chr7:12108676 1.10E-28 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27127 PF02045 CBFB_NFYA 4.70E-26 No_clan Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2781 K08064 - csv:101205549 354.755