Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan03g2781 | ATGCACAAATCAAATCAAGTTTCGCGTGGTGTGCACTACAACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAACAAAAGTACTCTGAATCGCAGCATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCGTGACAACCCCAAGTCAGTATTTAACACCTCCACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTTCTCCTTATGATGCTCAACCTTATCCTCCACAGCCCTATGGTGGGCAACCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCATCAGGTGATAAATCACAGCCCAATATAAATCTGAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA | 663 | 42.99 | MHKSNQVSRGVHYNPMTSSVHDYSDNGEADEQQKYSESQHHSSSVINGLNQPSVTTPSQYLTPPQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSQPNINLNSDRSDLASSEN | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 80816904 | 80822365 | - | Tan0020729.1 | Tan03g2781 | 748285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan03g2781 | 220 | MobiDBLite | consensus disorder prediction | 178 | 220 | - | - | |
Tan03g2781 | 220 | ProSiteProfiles | NF-YA/HAP2 family profile. | 126 | 186 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g2781 | 220 | SMART | cbf3 | 125 | 186 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g2781 | 220 | MobiDBLite | consensus disorder prediction | 144 | 162 | - | - | |
Tan03g2781 | 220 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 13 | 210 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Tan03g2781 | 220 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 131 | 151 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Tan03g2781 | 220 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 128 | 183 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g2781 | 220 | MobiDBLite | consensus disorder prediction | 143 | 162 | - | - | |
Tan03g2781 | 220 | PRINTS | CCAAT-binding transcription factor subunit B signature | 129 | 151 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g2781 | 220 | PRINTS | CCAAT-binding transcription factor subunit B signature | 160 | 183 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan03g2781 | 220 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Tan03g2781 | 220 | Gene3D | - | 126 | 187 | - | - | |
Tan03g2781 | 220 | MobiDBLite | consensus disorder prediction | 185 | 220 | - | - | |
Tan03g2781 | 220 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Tan03g2781 | 220 | MobiDBLite | consensus disorder prediction | 38 | 63 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g2781 | Tan-Chr3:80816904 | Tan06g0580 | Tan-Chr6:4461910 | 2.40E-28 | dispersed | |
Tan03g2781 | Tan-Chr3:80816904 | Tan07g0753 | Tan-Chr7:12108676 | 1.10E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27127 | PF02045 | CBFB_NFYA | 4.70E-26 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan03g2781 | K08064 | - | csv:101205549 | 354.755 |