Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2781 ATGCACAAATCAAATCAAGTTTCGCGTGGTGTGCACTACAACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAACAAAAGTACTCTGAATCGCAGCATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCGTGACAACCCCAAGTCAGTATTTAACACCTCCACAAGTTGGAGCAGGACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTTCTCCTTATGATGCTCAACCTTATCCTCCACAGCCCTATGGTGGGCAACCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCATCAGGTGATAAATCACAGCCCAATATAAATCTGAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA 663 42.99 MHKSNQVSRGVHYNPMTSSVHDYSDNGEADEQQKYSESQHHSSSVINGLNQPSVTTPSQYLTPPQVGAGHALAPPAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSQPNINLNSDRSDLASSEN 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 80816904 80822365 - Tan0020729.1 Tan03g2781 748285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2781 220 MobiDBLite consensus disorder prediction 178 220 - -
Tan03g2781 220 ProSiteProfiles NF-YA/HAP2 family profile. 126 186 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 SMART cbf3 125 186 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 MobiDBLite consensus disorder prediction 144 162 - -
Tan03g2781 220 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 210 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan03g2781 220 ProSitePatterns NF-YA/HAP2 subunit signature. 131 151 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Tan03g2781 220 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 128 183 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 MobiDBLite consensus disorder prediction 143 162 - -
Tan03g2781 220 PRINTS CCAAT-binding transcription factor subunit B signature 129 151 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 PRINTS CCAAT-binding transcription factor subunit B signature 160 183 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan03g2781 220 MobiDBLite consensus disorder prediction 1 23 - -
Tan03g2781 220 Gene3D - 126 187 - -
Tan03g2781 220 MobiDBLite consensus disorder prediction 185 220 - -
Tan03g2781 220 MobiDBLite consensus disorder prediction 1 67 - -
Tan03g2781 220 MobiDBLite consensus disorder prediction 38 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2781 K08064 - - csv:101205549 354.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2781 Tan-Chr3:80816904 Tan06g0580 Tan-Chr6:4461910 2.40E-28 dispersed
Tan03g2781 Tan-Chr3:80816904 Tan07g0753 Tan-Chr7:12108676 1.10E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan07g0753 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.6 1.3e-55 214.2
Tan07g0753 . 102 341 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.5 1.5e-49 194.1
Tan09g0832 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 53.8 2.2e-48 190.3
Tan03g2781 . 16 218 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.7 4.7e-49 191.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27127 PF02045 CBFB_NFYA 4.70E-26 No_clan Tan TF