Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2784 ATGAATAATCGTGCAATGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAAGGACCTATTACTTCAAAAGGATAATCGCTTCTGTGCAGATTGTCGTGCTTTAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTTGGTTCACACATATCAAAGGTGTTATCAGTGACATTGGATGAATGGAGTGATGATGAAATTGATGCCATGATAGAAGTTGGTGGAAATTCTTCCGCGAATGCAATTTATGAAGCCTATATTCCTGAGGGATTTTCAAAACCTGGACCAGATGCCACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAGGACTTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATTCTTCACAAAAATCACAATTGCAGAAAGGTATGGTGGAGTTTGTTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGACATGATGTCGAGCGATCCTTATGTAGTCTTGACTCTTGGGCAACAGACTGTCCAGACAACTATAGTCAAGAGCAACTTGAACCCTGTGTGGAATGAGGAACTGATGCTATCTGTACCTCAGTGTTTTGGATCCTTAAAGTTGCAAGTATACGACTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCCGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAGATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATAAGCGATAGCATCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATGTCACTCAAGCTTCAGAATGTGGAATCAGGTGAACTAGATCTAGAGCTAGAATGGATGGCTCTTGAACAATAG 1002 40.22 MNNRAMELGRPGSGKRRLKDLLLQKDNRFCADCRALDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAYIPEGFSKPGPDATHEQRSKFIRSKYELQDFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNSSQKSQLQKGMVEFVGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTVQTTIVKSNLNPVWNEELMLSVPQCFGSLKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALISDSIVNIVDGKVKQEMSLKLQNVESGELDLELEWMALEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 80845673 80851222 + Tan0011190.1 Tan03g2784 748288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2784 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Tan03g2784 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Tan03g2784 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Tan03g2784 333 SMART C2_3c 178 273 IPR000008 -
Tan03g2784 333 CDD ArfGap 18 124 - -
Tan03g2784 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Tan03g2784 333 Gene3D C2 domain 176 333 IPR035892 -
Tan03g2784 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Tan03g2784 333 Pfam C2 domain 177 265 IPR000008 -
Tan03g2784 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Tan03g2784 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Tan03g2784 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Tan03g2784 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Tan03g2784 333 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
Tan03g2784 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Tan03g2784 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
Tan03g2784 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 167 267 IPR035892 -
Tan03g2784 333 PRINTS C2 domain signature 193 205 IPR000008 -
Tan03g2784 333 PRINTS C2 domain signature 217 230 IPR000008 -
Tan03g2784 333 PRINTS C2 domain signature 238 246 IPR000008 -
Tan03g2784 333 CDD C2_ArfGAP 176 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2784 Tan-Chr3:80845673 Tan04g0537 Tan-Chr4:4614882 1.10E-90 dispersed
Tan01g4456 Tan-Chr1:109860334 Tan03g2784 Tan-Chr3:80845673 1.30E-23 transposed
Tan11g1555 Tan-Chr11:14351095 Tan03g2784 Tan-Chr3:80845673 4.40E-92 transposed
Tan03g2784 Tan-Chr3:80845673 Tan05g2704 Tan-Chr5:78894888 9.10E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2784 K12486 - csv:101218116 617.461