Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan03g2792 | ATGGAGGACTATATCGTTACCGAAGAACGACATGTCGATGACCACGAGCTCAGACTATTTGCAATATTTGATGGCCACTCCGGTTGCAATGTTGCAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAAATCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGGAGAGGAGGTTCAACAGCAGTCACTGCTATACTGATCGATGGACAGAAGCTAATTGTTGCACACGTAGGTGACTCACGGGCGGTGGTATGCAGGAATGGCTCTGCAAAACCAATTACAGTCGATCGTGAACCAGAGAAGGAGAAGGAGCTGGTCGAGAGCCAGGGCGGATTTGTTGTACAAATGCAGCTAGCAATGTCAAGGGCATTTGGAGATGCAAAGCTCAAAGAACACATAAGTTCAGAACCAGATATCAGGATCCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTGATGTCAAACCAAGAGGCTTGTGATTGCATCAGAGAAATGGTTATGGATGCTCAAAAGGCTTCAGAGGAGTTGATCAAAGAGGCATTGTCTCGGGAGTGCTACGATGATATCTCCGGCATTGTTGTTACCTTCCATTGA | 630 | 46.35 | MEDYIVTEERHVDDHELRLFAIFDGHSGCNVAEYLQSHLFDNILKSDFWEDPEGAIRRRGGSTAVTAILIDGQKLIVAHVGDSRAVVCRNGSAKPITVDREPEKEKELVESQGGFVVQMQLAMSRAFGDAKLKEHISSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMVMDAQKASEELIKEALSRECYDDISGIVVTFH | 209 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 80906878 | 80908012 | - | Tan0004515.1 | Tan03g2792 | 748296 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan03g2792 | 209 | SUPERFAMILY | PP2C-like | 1 | 209 | IPR036457 | - | |
| Tan03g2792 | 209 | Gene3D | - | 1 | 209 | IPR036457 | - | |
| Tan03g2792 | 209 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 208 | IPR001932 | - | |
| Tan03g2792 | 209 | SMART | PP2C_4 | 1 | 206 | IPR001932 | - | |
| Tan03g2792 | 209 | PANTHER | PROTEIN PHOSPHATASE | 1 | 206 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Tan03g2792 | 209 | CDD | PP2Cc | 1 | 208 | IPR001932 | - | |
| Tan03g2792 | 209 | Pfam | Protein phosphatase 2C | 59 | 201 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan02g0201 | Tan-Chr2:1718196 | Tan03g2792 | Tan-Chr3:80906878 | 1.30E-62 | dispersed | |
| Tan03g2792 | Tan-Chr3:80906878 | Tan11g1206 | Tan-Chr11:9994268 | 2.40E-38 | dispersed | |
| Tan03g2792 | Tan-Chr3:80906878 | Tan02g0200 | Tan-Chr2:1718196 | 5.70E-64 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan03g2792 | K17506 | - | csv:101211141 | 340.887 |