Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2836 ATGGGAAAGAAGAAGAAGAGGGTTTCGTCTAAGGTATGGTGTTACTATTGCGACAGAGAATTCGATGACGAGAAGATATTGGTACAGCATCAGAAGGCCAAGCACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCGGTCACCAAAGTTCCTAATGCAAAATCAGGCAGAGAATCAACAGATATTGAAATATATGGAATGCAAGGAATTCCACCTGATGTCTTGGCAGCACACTATGGAGAGGAGGATGAAGAGTCGGTATCGAAGGTGGCCAAAGTGGAGATGCCACCAACTCAGATGGTTGGTGGTGTGGTGCCTGGATCGCTGGGTATTGTATACCCTCCTCAACCAGGTTTAGCTGCAATGCAACCTATATATGCTTCGACTGGACAAGCGCTGCCAACTGCCTGGCAAGTTCCACCTCGTCCCCAACCTTGGTTTCCCCCAAATTCAGCCGTTTCAATTCCTCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCCCCACTTCCAGTATCATCAACTCCTATGCTCCAGCCTTCACAAATAACGCCTCCTGGATTGCCTTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTTCCCATTGTTAGTAATAGCCATGGAACTACCCAAAGCTCGCCCTTTCCTTCATCTACACTTTCAACAAGCATTCCTTTGACATCGGCAGCAGAAATCAAGGGCTCAGTGAGTGCACATTTGGGCACTAACTCCTTTTCCACTATTGGAAATCAAGTTCCAAGCATTCCAGGTGGAATATTAAGCAATTCACACTCTTATGCCTCGGGACCAAACACAGGTGGTCCCTCTATTGGACCACCTCCTGTAATTGCAAATAAAGCTCCTACTCAGCCATCAACAAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAG 1125 46.58 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKSGRESTDIEIYGMQGIPPDVLAAHYGEEDEESVSKVAKVEMPPTQMVGGVVPGSLGIVYPPQPGLAAMQPIYASTGQALPTAWQVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPLPVSSTPMLQPSQITPPGLPSTTPSVSVSQPLFPIVSNSHGTTQSSPFPSSTLSTSIPLTSAAEIKGSVSAHLGTNSFSTIGNQVPSIPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 81359642 81364850 - Tan0012693.1 Tan03g2836 748340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2836 374 Gene3D Classic Zinc Finger 1 66 - -
Tan03g2836 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Tan03g2836 374 CDD SUF4-like 13 92 - -
Tan03g2836 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Tan03g2836 374 SMART c2h2final6 12 35 IPR013087 -
Tan03g2836 374 SMART c2h2final6 36 59 IPR013087 -
Tan03g2836 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
Tan03g2836 374 MobiDBLite consensus disorder prediction 287 315 - -
Tan03g2836 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2836 Tan-Chr3:81359642 Tan03g2837 Tan-Chr3:81359642 5.40E-198 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27130 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2836 K27810 - csv:101206973 672.544