Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan03g2898 ATGGCTGCAGCAGCTTGCCATTTGAAGTTCCTCCTCACCTCCCTAAAGCTTACGCTGCTGCTCCTTCCTTGTGTCTGCTCCCACTCTCTGTCCCTCAAGGCACAAGCTTCTCTTCTGGTTTCCATCAAACAGTCTTTTGATCAACCCACTCCCTCCCTCCTGGACTGGAATCCTTCAAATTACTCATCCCTCTGCTCTTGGACTGGAATTCAATGCGATGACATGAACACATCACTAGTGTCGCTGGACATTTCCAATTCCAACATCTCCGGGACTTTCCCCCCCCTAATTCACAAGCTAACCAAGCTTCGTTCTCTCAACATTTCCAACAATCAGCTCAGAGGACAACTCCACTGGGAGTATTCTCAGCTGAAACTGCTGCAGGTATTTGATGCTTACAACAACAACTTCAATGGGTCACTCCCCACAGGCGCGGCTCAACTTCCCAGTCTAAAGCACTTAAATCTAGCCGGGAATTACTTCAACGGTGCAATCCCTCGAAGCTATGGTGATATGGGGGAACTCACTTATCTGTCGCTTGCCGGCAATGACTTGGGCGGTCCCATTCCCCTTGAGCTCGGTAATCTTACCAATCTCCAGCAGCTTTATTTGGGATACTACAATGAGTTTGAGGATGGAATACCCTCTCAACTTGGAAAGCTTGTGAATTTGAATCATCTCGACCTTGCCAGTTGTGGTTTACGAGGTCCAATCCCACCCGAGTTAGGGAATCTCAACAAGTTAGACACTCTGTTTTTGCAGACAAATCAGCTCACTGGTTCAATTCCTCACCAGTTGGGCAACTTGAGCAGCTTGGTTTCGCTTGACCTCTCCAACAACGAATTAACAGGAGAAATCCCCCTTGAATTTGAAAACCTCCGTCAGCTTTTGCTCTTGAACTTGTTCATCAACAAGTTTCATGGAGAGATTCCTCATGTTCTAGCCAATCTTCCCAAGTTGGAGGTTTTGAAGGTGTGGCAAAATAACTTCACAGGAGCCATTCCATCAAAGCTTGGTGAGAATGGGAGACTGACGGAGCTTGACTTGTCCACCAACAAGCTCACAGGACTGGTACCGGAGCGTCTGTGCTTGGGAGGAAGGCTGAAGATCTTGATTTCACTGAACAATTTTCTGTTTGGGCCTGTGCCACGTGATCTAGGACGATGTCAGACGCTTGTAAGAGTTCGAATGGGTCAGAATTATTTGACGGGATCAATCCCAGAGGGGCTGCTTTACTTGCCACAGCTCTCCCTCATGGAATTGCAGAACAACTACCTGAGCGGACCCCTTCCACAAGACATGCGCATGCCATCAAAACTCGGCCAGCTAAACCTTTCCAACAATCGCTTTTCTGGATCACTTCCCACCTCCATCGGAAACTTCACAAACTTGCAGATTCTGCTTTTGAGTGGAAACCATTTCTCCGGGGTCATTCCTTCTGAAATAGGCAAACTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACCTCTCCGGTAGAATCCCACCTGAATTGGGTACTTGTGTCTCCCTCACATACCTGGATTTGAGCCTCAATCAGCTAACCTCTCCAATCCCAGTTCAAATCTCACAGATTCGCATCCTAAATTATCTAAACTTGTCTTGGAACCATCTGAACCAAAGCCTTCCCAAGGAAATTGGGTCCATAAAGAGCTTGACTTGTGCGGACTTTTCCCACAATAACTTGTCTGGTCCTATACCCGAAACTGGGCAGTTTTTACTCTTCAATTCCACATCCTTCGTGGGCAACCCTCAGCTGTGTGGATCCTCCTCGTTGAATCCCTGCAACGAGTCAACATCAAAATCCCAAACCCCAACGGGCGCCAGTTCCAAAGTTGCTGGGAAATATAAGCTTGTGTTTGCGTTGGGTCTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATCATTCAGACAAGGAAGGCGAAGAAGAAATCATGTTCGTGGAAGCTAGCAGCGTTCCAAAAGCTGGAATTTGGAAGCAAGGACATCATAGAGTGCGTAAAAGAGAACAACATAATTGGAAAAGGTGGAGCTGGAATTGTGTACAAAGGAATCATGCCAACTGGAGAACAAGTAGCCATAAAAAAGCTATTGGCCATAAACAAGGGATCCTCCCACGACAACGGTCTGTCGGCGGAGATACAGACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTAGCGTTTTGCTCCAATAAGCAGACGAATCTGCTGGTTTACGAGTACATGCCCAACGGAAGTTTAGGAGAAGTTCTCCATGGGAAGAGGGGTGGTTGCCTAAAATGGGGAACCAGGCTGAAGATAGCTATAGAAGCGGCCAAAGGGCTCTGCTATTTGCACCATGACTGTTCGCCGCTCATAATTCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGATTACGAGGCTCATGTAGCGGATTTCGGGTTGGCCAAGTTCTTGCAGGACAATGGAACATCGGAGTGCATGTCTGTCATTGCCGGCTCTTACGGGTATATTGCTCCAGAATATGCATACACATTAAAAGTGGATGAAAAAAGTGATGTTTACAGTTTCGGAGTGGTATTGCTGGAGCTTATAACAGGCCGAAAGCCTGTGGATAATTTCGGGGAAGATGGTTTGGACATTGTCCAATGGACTAAGATCCAAACCAACTCTACGAAAGAAGGAGTTATAAAGATATTTGATCAACGATTAAGTAACATACCAATAAATGAAGCAAAGCATGTCTTTTTTGTTGCTATGTTATGCGTCCAAGAACACAGCGTGGAGCGGCCAACAATGAGAGAAGTAATTCAAATGCTTGCACAAGCTCACCAACCAAATACCTTCCACATGCATTGA 2883 46.38 MAAAACHLKFLLTSLKLTLLLLPCVCSHSLSLKAQASLLVSIKQSFDQPTPSLLDWNPSNYSSLCSWTGIQCDDMNTSLVSLDISNSNISGTFPPLIHKLTKLRSLNISNNQLRGQLHWEYSQLKLLQVFDAYNNNFNGSLPTGAAQLPSLKHLNLAGNYFNGAIPRSYGDMGELTYLSLAGNDLGGPIPLELGNLTNLQQLYLGYYNEFEDGIPSQLGKLVNLNHLDLASCGLRGPIPPELGNLNKLDTLFLQTNQLTGSIPHQLGNLSSLVSLDLSNNELTGEIPLEFENLRQLLLLNLFINKFHGEIPHVLANLPKLEVLKVWQNNFTGAIPSKLGENGRLTELDLSTNKLTGLVPERLCLGGRLKILISLNNFLFGPVPRDLGRCQTLVRVRMGQNYLTGSIPEGLLYLPQLSLMELQNNYLSGPLPQDMRMPSKLGQLNLSNNRFSGSLPTSIGNFTNLQILLLSGNHFSGVIPSEIGKLRNLLKLDMSRNNLSGRIPPELGTCVSLTYLDLSLNQLTSPIPVQISQIRILNYLNLSWNHLNQSLPKEIGSIKSLTCADFSHNNLSGPIPETGQFLLFNSTSFVGNPQLCGSSSLNPCNESTSKSQTPTGASSKVAGKYKLVFALGLLMCSVIFAALAIIQTRKAKKKSCSWKLAAFQKLEFGSKDIIECVKENNIIGKGGAGIVYKGIMPTGEQVAIKKLLAINKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGGCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDYEAHVADFGLAKFLQDNGTSECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVDNFGEDGLDIVQWTKIQTNSTKEGVIKIFDQRLSNIPINEAKHVFFVAMLCVQEHSVERPTMREVIQMLAQAHQPNTFHMH 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 82018236 82023056 - Tan0021262.1 Tan03g2898 748402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan03g2898 960 SMART LRR_typ_2 461 484 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 221 245 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 317 341 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 485 509 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 533 557 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 269 292 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 342 365 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 148 171 IPR003591 -
Tan03g2898 960 SMART LRR_typ_2 100 123 IPR003591 -
Tan03g2898 960 Gene3D Ribonuclease Inhibitor 313 612 IPR032675 -
Tan03g2898 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan03g2898 960 Gene3D Phosphorylase Kinase; domain 1 641 753 - -
Tan03g2898 960 ProSiteProfiles Protein kinase domain profile. 676 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2898 960 SUPERFAMILY L domain-like 290 603 - -
Tan03g2898 960 Gene3D Transferase(Phosphotransferase) domain 1 754 959 - -
Tan03g2898 960 FunFam Leucine-rich repeat receptor-like protein kinase 33 191 - -
Tan03g2898 960 Pfam Leucine Rich Repeat 150 170 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 102 119 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 223 245 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 78 100 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 271 293 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 440 461 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 487 509 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 343 363 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 511 531 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 Pfam Leucine Rich Repeat 463 485 IPR001611 GO:0005515(InterPro)
Tan03g2898 960 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 321 607 - -
Tan03g2898 960 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 209 314 - -
Tan03g2898 960 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 952 IPR050647 -
Tan03g2898 960 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Tan03g2898 960 Gene3D Ribonuclease Inhibitor 189 289 IPR032675 -
Tan03g2898 960 Pfam Protein kinase domain 678 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2898 960 SMART serkin_6 676 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan03g2898 960 SUPERFAMILY Protein kinase-like (PK-like) 672 948 IPR011009 -
Tan03g2898 960 PRINTS Leucine-rich repeat signature 344 357 - -
Tan03g2898 960 PRINTS Leucine-rich repeat signature 485 498 - -
Tan03g2898 960 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 645 753 - -
Tan03g2898 960 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 754 960 - -
Tan03g2898 960 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Tan03g2898 960 SUPERFAMILY L domain-like 62 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1551 Tan-Chr1:15796289 Tan03g2898 Tan-Chr3:82018236 4.50E-143 dispersed
Tan01g5036 Tan-Chr1:115927786 Tan03g2898 Tan-Chr3:82018236 9.20E-117 dispersed
Tan03g0284 Tan-Chr3:42460360 Tan03g2898 Tan-Chr3:82018236 2.90E-56 dispersed
Tan03g1727 Tan-Chr3:73183948 Tan03g2898 Tan-Chr3:82018236 1.90E-106 dispersed
Tan03g2898 Tan-Chr3:82018236 Tan05g2466 Tan-Chr5:75814122 1.90E-85 dispersed
Tan10g0588 Tan-Chr10:4804766 Tan03g2898 Tan-Chr3:82018236 1.60E-55 dispersed
Tan11g1153 Tan-Chr11:9196209 Tan03g2898 Tan-Chr3:82018236 9.20E-33 dispersed
Tan11g1154 Tan-Chr11:9196209 Tan03g2898 Tan-Chr3:82018236 9.20E-33 dispersed
Tan03g2898 Tan-Chr3:82018236 Tan03g1728 Tan-Chr3:73213135 1.60E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67409 PF00069 Pkinase 3.70E-47 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan03g2898 - - - 0.0