Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0013 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCTTGACAACAACACCGCTCCCCCTCATCTCCACCATCACCACCAAAACCAAAAACAAAGCTCTTCAAAATCCCAATCTCCATCTCCTCAGCAGCAACAGCAAGTTCATGTGGTCCCTTTCGATGGCAGATCACCAGGTCCACCCTTCATGGGCTCCATCTCCACTACTCTTCTCTCTCTCCCTTCTTCTTCTTCCAATTCTTCCTCAACCTCCGCCCTCACTACCACCACCAATAACCCTTCTCCCCGATCCGCCTCCAATTCCAACGCCCTCAAGCGATCCACCAAAGATCGCCACACCAAGGTCGACGGTCGCGGCCGCCGCATCCGTATGCCCGCCACTTGCGCTGCTAGGGTTTTCCAGTTGACTCGAGAATTGGGTCACAAGTCCGACGGCGAGACCATCGAATGGCTTCTCCAGCAAGCCGAGCCAGCCATCATCGCCGCCACTGGCACCGGTACAATCCCTGCCAATTTCTCCTCCTTGAACATCTCCATTCGTAGCAGCGGATCCACCCTCTCCGCCCCTCCCTCCAAATCCGCCCCCCATTCCTTTCCTGCCGCTTTGGCTCTCGCTCACCATCCCCACGTCTACGACGAAGGCTTCGCACACGCTGCTTTGCTTGGCTTTCACCACCACCACCATCAGCACCAACAATTGAATCTAATGTCGCCCGATCAAATTCCGGAGGCCCTCCCCAGCGGTAGCGCTGGAGGAGACTCCACCGATAATTATATGAGAAAACGCTTCAGAGAGGATCTGTTTAAAGAGGATACACAATCTCAAGGGGAGAGCAGCGACGGTGCTGGATCTCCCAAAGCAATTAAGAACGATCAATCATTACAGAAACAACAGCAGCAGCAGCAATCAGCATCTTCGGGGATAATCCGACCAGCGACGGCGATGTGGGCGGTGGGTCCGGCTCCAAGCAGTGGAGCTAGCAACACGTTTTGGATGTTGCCAGTGACAACAGGTAATTCAGGCGGGGGAAATGTGGGGAGTTCTGGGGTGGGGGGTGGTCCTTTGGAAGCTCAGATGTGGCCATTCTCGACGAGTTCAAACACATTGCAAGCGCCATTACATTTCATGCCAAGGTTCAACATCCCTGCTGCTGCTGCTGCTGGTGGTGGGGTGGAATTTCAACCAGCTGGTGCAGGCGGAGGAAGTGGAAGAGCCAGCCAATTGCAACTGGGTTCCATGTTAATGCAGCAGCAGCAGCAACAACAACAAGCAGCACTGGGAGTGGGAGTATCAGAGTCGAATTTGGGAGTGTTGGCTGCTCTTAATGCTGCATATTCGAGGGGAGGTTTGAATATGAATTCAGATCATCATCCAATGGACCATCATCCCAACGCAAATGATAGCGGGGACGAAGCTCCAAACAGTTCCCAATGA 1437 53.58 MELTDMQQSNKQQQLDNNTAPPHLHHHHQNQKQSSSKSQSPSPQQQQQVHVVPFDGRSPGPPFMGSISTTLLSLPSSSSNSSSTSALTTTTNNPSPRSASNSNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFPAALALAHHPHVYDEGFAHAALLGFHHHHHQHQQLNLMSPDQIPEALPSGSAGGDSTDNYMRKRFREDLFKEDTQSQGESSDGAGSPKAIKNDQSLQKQQQQQQSASSGIIRPATAMWAVGPAPSSGASNTFWMLPVTTGNSGGGNVGSSGVGGGPLEAQMWPFSTSSNTLQAPLHFMPRFNIPAAAAAGGGVEFQPAGAGGGSGRASQLQLGSMLMQQQQQQQQAALGVGVSESNLGVLAALNAAYSRGGLNMNSDHHPMDHHPNANDSGDEAPNSSQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 229472 232330 - Tan0001177.1 Tan04g0013 748417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0013 478 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 78 443 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan04g0013 478 MobiDBLite consensus disorder prediction 1 20 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 63 105 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 269 308 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 106 121 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 33 52 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 275 308 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 452 478 - -
Tan04g0013 478 Pfam TCP family transcription factor 108 268 IPR017887 -
Tan04g0013 478 ProSiteProfiles TCP domain profile. 109 163 IPR017887 -
Tan04g0013 478 MobiDBLite consensus disorder prediction 1 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0013 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0013 Tan-Chr4:229472 Tan05g3331 Tan-Chr5:85117847 9.70E-35 dispersed
Tan04g0013 Tan-Chr4:229472 Tan09g2130 Tan-Chr9:71602131 5.50E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27137 PF03634 TCP 1.50E-38 No_clan Tan TF