Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0013 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCTTGACAACAACACCGCTCCCCCTCATCTCCACCATCACCACCAAAACCAAAAACAAAGCTCTTCAAAATCCCAATCTCCATCTCCTCAGCAGCAACAGCAAGTTCATGTGGTCCCTTTCGATGGCAGATCACCAGGTCCACCCTTCATGGGCTCCATCTCCACTACTCTTCTCTCTCTCCCTTCTTCTTCTTCCAATTCTTCCTCAACCTCCGCCCTCACTACCACCACCAATAACCCTTCTCCCCGATCCGCCTCCAATTCCAACGCCCTCAAGCGATCCACCAAAGATCGCCACACCAAGGTCGACGGTCGCGGCCGCCGCATCCGTATGCCCGCCACTTGCGCTGCTAGGGTTTTCCAGTTGACTCGAGAATTGGGTCACAAGTCCGACGGCGAGACCATCGAATGGCTTCTCCAGCAAGCCGAGCCAGCCATCATCGCCGCCACTGGCACCGGTACAATCCCTGCCAATTTCTCCTCCTTGAACATCTCCATTCGTAGCAGCGGATCCACCCTCTCCGCCCCTCCCTCCAAATCCGCCCCCCATTCCTTTCCTGCCGCTTTGGCTCTCGCTCACCATCCCCACGTCTACGACGAAGGCTTCGCACACGCTGCTTTGCTTGGCTTTCACCACCACCACCATCAGCACCAACAATTGAATCTAATGTCGCCCGATCAAATTCCGGAGGCCCTCCCCAGCGGTAGCGCTGGAGGAGACTCCACCGATAATTATATGAGAAAACGCTTCAGAGAGGATCTGTTTAAAGAGGATACACAATCTCAAGGGGAGAGCAGCGACGGTGCTGGATCTCCCAAAGCAATTAAGAACGATCAATCATTACAGAAACAACAGCAGCAGCAGCAATCAGCATCTTCGGGGATAATCCGACCAGCGACGGCGATGTGGGCGGTGGGTCCGGCTCCAAGCAGTGGAGCTAGCAACACGTTTTGGATGTTGCCAGTGACAACAGGTAATTCAGGCGGGGGAAATGTGGGGAGTTCTGGGGTGGGGGGTGGTCCTTTGGAAGCTCAGATGTGGCCATTCTCGACGAGTTCAAACACATTGCAAGCGCCATTACATTTCATGCCAAGGTTCAACATCCCTGCTGCTGCTGCTGCTGGTGGTGGGGTGGAATTTCAACCAGCTGGTGCAGGCGGAGGAAGTGGAAGAGCCAGCCAATTGCAACTGGGTTCCATGTTAATGCAGCAGCAGCAGCAACAACAACAAGCAGCACTGGGAGTGGGAGTATCAGAGTCGAATTTGGGAGTGTTGGCTGCTCTTAATGCTGCATATTCGAGGGGAGGTTTGAATATGAATTCAGATCATCATCCAATGGACCATCATCCCAACGCAAATGATAGCGGGGACGAAGCTCCAAACAGTTCCCAATGA 1437 53.58 MELTDMQQSNKQQQLDNNTAPPHLHHHHQNQKQSSSKSQSPSPQQQQQVHVVPFDGRSPGPPFMGSISTTLLSLPSSSSNSSSTSALTTTTNNPSPRSASNSNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFPAALALAHHPHVYDEGFAHAALLGFHHHHHQHQQLNLMSPDQIPEALPSGSAGGDSTDNYMRKRFREDLFKEDTQSQGESSDGAGSPKAIKNDQSLQKQQQQQQSASSGIIRPATAMWAVGPAPSSGASNTFWMLPVTTGNSGGGNVGSSGVGGGPLEAQMWPFSTSSNTLQAPLHFMPRFNIPAAAAAGGGVEFQPAGAGGGSGRASQLQLGSMLMQQQQQQQQAALGVGVSESNLGVLAALNAAYSRGGLNMNSDHHPMDHHPNANDSGDEAPNSSQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 229472 232330 - Tan0001177.1 Tan04g0013 748417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0013 478 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 78 443 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan04g0013 478 MobiDBLite consensus disorder prediction 1 20 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 63 105 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 269 308 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 106 121 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 33 52 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 275 308 - -
Tan04g0013 478 MobiDBLite consensus disorder prediction 452 478 - -
Tan04g0013 478 Pfam TCP family transcription factor 108 268 IPR017887 -
Tan04g0013 478 ProSiteProfiles TCP domain profile. 109 163 IPR017887 -
Tan04g0013 478 MobiDBLite consensus disorder prediction 1 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0013 Tan-Chr4:229472 Tan05g3331 Tan-Chr5:85117847 9.70E-35 dispersed
Tan04g0013 Tan-Chr4:229472 Tan09g2130 Tan-Chr9:71602131 5.50E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27137 PF03634 TCP 1.50E-38 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0013 - - - 0.0