Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0015 ATGGAGACTCACTTCAATCACAATCTATTCGACAGGCGACCCATTGTGAAGAACAAGACTCCTGCTGTCAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTTACAGAGGATACATTGAAGGCATTAAAGGAGAAGGCAAAACAGTCGGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTACGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCACTCTCACATTCATGGGGAGAGGCAGTATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGGCACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTAGACTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTCAAATATACACCACCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCATCATCAGATCGCCCATATGCTTGCCCGTATGAAGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGGTATGGCGGAAAACGGGTAAATATGAAAAACCAGAAACAGAACAAGCCTAAACCAAACTTGAAGTTACCGCCTTCAAAAAGATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTGCAGTTAAAAAATCATGGCCGGTTAAAGAAGAAACCTACGAGGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGAGGGTTGGAGATACGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA 1110 42.88 METHFNHNLFDRRPIVKNKTPAVKWIKEWVPQDVVATGGKCFLLKWVTEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEIEASDQDGYGGKRVNMKNQKQNKPKPNLKLPPSKRSQRKGTTPSPAPMSAVKKSWPVKEETYEEEDSEETEEDRENVEEGWRYAENEDDDEETEYED 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 243018 247610 + Tan0000422.1 Tan04g0015 748419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0015 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Tan04g0015 369 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Tan04g0015 369 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Tan04g0015 369 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Tan04g0015 369 MobiDBLite consensus disorder prediction 333 347 - -
Tan04g0015 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Tan04g0015 369 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Tan04g0015 369 MobiDBLite consensus disorder prediction 202 227 - -
Tan04g0015 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Tan04g0015 369 FunFam Putative zinc finger protein 143 103 133 - -
Tan04g0015 369 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Tan04g0015 369 Gene3D Classic Zinc Finger 162 191 - -
Tan04g0015 369 MobiDBLite consensus disorder prediction 354 369 - -
Tan04g0015 369 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Tan04g0015 369 MobiDBLite consensus disorder prediction 306 320 - -
Tan04g0015 369 Gene3D Classic Zinc Finger 103 133 - -
Tan04g0015 369 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Tan04g0015 369 Gene3D Classic Zinc Finger 77 102 - -
Tan04g0015 369 Gene3D Classic Zinc Finger 134 161 - -
Tan04g0015 369 Gene3D Classic Zinc Finger 201 270 - -
Tan04g0015 369 SMART c2h2final6 136 160 IPR013087 -
Tan04g0015 369 SMART c2h2final6 229 254 IPR013087 -
Tan04g0015 369 SMART c2h2final6 77 101 IPR013087 -
Tan04g0015 369 SMART c2h2final6 166 190 IPR013087 -
Tan04g0015 369 SMART c2h2final6 106 130 IPR013087 -
Tan04g0015 369 FunFam zinc finger transcription factor YY1 163 194 - -
Tan04g0015 369 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Tan04g0015 369 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Tan04g0015 369 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Tan04g0015 369 FunFam zinc finger transcription factor YY1 77 102 - -
Tan04g0015 369 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Tan04g0015 369 FunFam Zinc finger protein 410 134 161 - -
Tan04g0015 369 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 17 333 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Tan04g0015 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Tan04g0015 369 MobiDBLite consensus disorder prediction 206 220 - -
Tan04g0015 369 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Tan04g0015 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Tan04g0015 369 FunFam Zinc finger transcription factor YY1 204 271 - -
Tan04g0015 369 MobiDBLite consensus disorder prediction 256 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0015 Tan-Chr4:243018 Tan04g0017 Tan-Chr4:243018 3.60E-130 dispersed
Tan04g0015 Tan-Chr4:243018 Tan04g0016 Tan-Chr4:243018 3.30E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27138 PF00096 zf-C2H2 0.0049 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0015 - - - 0.0