Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0016 ATGAAAGAATTGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTTACAGAGGATACATTGAAGGCATTAAAGGAGAAGGCAAAACAGTCGGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTACGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCACTCTCACATTCATGGGGAGAGGCAGTATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGGCACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTAGACTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTCAAATATACACCACCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCATCATCAGATCGCCCATATGCTTGCCCGTATGAAGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGGTATGGCGGAAAACGGGTAAATATGAAAAACCAGAAACAGAACAAGCCTAAACCAAACTTGAAGTTACCGCCTTCAAAAAGATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTGCAGTTAAAAAATCATGGCCGGTTAAAGAAGAAACCTACGAGGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGAGGGTTGGAGATACGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA 1035 42.61 MKELVPQDVVATGGKCFLLKWVTEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEIEASDQDGYGGKRVNMKNQKQNKPKPNLKLPPSKRSQRKGTTPSPAPMSAVKKSWPVKEETYEEEDSEETEEDRENVEEGWRYAENEDDDEETEYED 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 243018 247610 + Tan0000422.2 Tan04g0016 748420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0016 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 110 IPR013087 -
Tan04g0016 344 SMART c2h2final6 81 105 IPR013087 -
Tan04g0016 344 SMART c2h2final6 111 135 IPR013087 -
Tan04g0016 344 SMART c2h2final6 52 76 IPR013087 -
Tan04g0016 344 SMART c2h2final6 141 165 IPR013087 -
Tan04g0016 344 SMART c2h2final6 204 229 IPR013087 -
Tan04g0016 344 MobiDBLite consensus disorder prediction 181 195 - -
Tan04g0016 344 FunFam zinc finger transcription factor YY1 138 169 - -
Tan04g0016 344 Pfam Zinc finger, C2H2 type 81 105 IPR013087 -
Tan04g0016 344 Pfam Zinc finger, C2H2 type 204 229 IPR013087 -
Tan04g0016 344 Pfam Zinc finger, C2H2 type 141 165 IPR013087 -
Tan04g0016 344 Pfam Zinc finger, C2H2 type 111 135 IPR013087 -
Tan04g0016 344 Pfam Zinc finger, C2H2 type 54 76 IPR013087 -
Tan04g0016 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 140 IPR013087 -
Tan04g0016 344 ProSitePatterns Zinc finger C2H2 type domain signature. 113 135 IPR013087 -
Tan04g0016 344 SUPERFAMILY beta-beta-alpha zinc fingers 55 105 IPR036236 -
Tan04g0016 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Tan04g0016 344 MobiDBLite consensus disorder prediction 329 344 - -
Tan04g0016 344 MobiDBLite consensus disorder prediction 231 344 - -
Tan04g0016 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 170 IPR013087 -
Tan04g0016 344 SUPERFAMILY beta-beta-alpha zinc fingers 199 227 IPR036236 -
Tan04g0016 344 ProSitePatterns Zinc finger C2H2 type domain signature. 206 229 IPR013087 -
Tan04g0016 344 SUPERFAMILY beta-beta-alpha zinc fingers 135 168 IPR036236 -
Tan04g0016 344 Gene3D Classic Zinc Finger 137 166 - -
Tan04g0016 344 MobiDBLite consensus disorder prediction 176 202 - -
Tan04g0016 344 MobiDBLite consensus disorder prediction 308 322 - -
Tan04g0016 344 FunFam Zinc finger protein 410 109 136 - -
Tan04g0016 344 Gene3D Classic Zinc Finger 178 245 - -
Tan04g0016 344 MobiDBLite consensus disorder prediction 281 295 - -
Tan04g0016 344 ProSitePatterns Zinc finger C2H2 type domain signature. 83 105 IPR013087 -
Tan04g0016 344 ProSitePatterns Zinc finger C2H2 type domain signature. 143 166 IPR013087 -
Tan04g0016 344 FunFam zinc finger transcription factor YY1 52 77 - -
Tan04g0016 344 Gene3D Classic Zinc Finger 78 108 - -
Tan04g0016 344 FunFam Zinc finger transcription factor YY1 179 246 - -
Tan04g0016 344 Gene3D Classic Zinc Finger 109 136 - -
Tan04g0016 344 Gene3D Classic Zinc Finger 52 77 - -
Tan04g0016 344 ProSitePatterns Zinc finger C2H2 type domain signature. 54 76 IPR013087 -
Tan04g0016 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 81 IPR013087 -
Tan04g0016 344 FunFam Putative zinc finger protein 143 78 108 - -
Tan04g0016 344 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 36 308 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Tan04g0016 344 SUPERFAMILY beta-beta-alpha zinc fingers 92 144 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0015 Tan-Chr4:243018 Tan04g0016 Tan-Chr4:243018 3.30E-131 tandem
Tan04g0016 Tan-Chr4:243018 Tan04g0017 Tan-Chr4:243018 4.40E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27139 PF00096 zf-C2H2 0.0045 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0016 - - - 0.0