Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0017 ATGCTAGTTGCTTTCCATTTTAGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTTACAGAGGATACATTGAAGGCATTAAAGGAGAAGGCAAAACAGTCGGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTACGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCACTCTCACATTCATGGGGAGAGGCAGTATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGGCACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTAGACTTCAACTTGAGATCACATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTCAAATATACACCACCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCATCATCAGATCGCCCATATGCTTGCCCGTATGAAGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGGTATGGCGGAAAACGGGTAAATATGAAAAACCAGAAACAGAACAAGCCTAAACCAAACTTGAAGTTACCGCCTTCAAAAAGATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTGCAGTTAAAAAATCATGGCCGGTTAAAGAAGAAACCTACGAGGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGAGGGTTGGAGATACGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA 1047 42.69 MLVAFHFRVPQDVVATGGKCFLLKWVTEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEIEASDQDGYGGKRVNMKNQKQNKPKPNLKLPPSKRSQRKGTTPSPAPMSAVKKSWPVKEETYEEEDSEETEEDRENVEEGWRYAENEDDDEETEYED 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 243018 247610 + Tan0000422.3 Tan04g0017 748421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0017 348 MobiDBLite consensus disorder prediction 285 299 - -
Tan04g0017 348 ProSitePatterns Zinc finger C2H2 type domain signature. 210 233 IPR013087 -
Tan04g0017 348 Pfam Zinc finger, C2H2 type 208 233 IPR013087 -
Tan04g0017 348 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Tan04g0017 348 Pfam Zinc finger, C2H2 type 115 139 IPR013087 -
Tan04g0017 348 Pfam Zinc finger, C2H2 type 145 169 IPR013087 -
Tan04g0017 348 SUPERFAMILY beta-beta-alpha zinc fingers 59 105 IPR036236 -
Tan04g0017 348 MobiDBLite consensus disorder prediction 180 206 - -
Tan04g0017 348 FunFam zinc finger transcription factor YY1 142 173 - -
Tan04g0017 348 MobiDBLite consensus disorder prediction 312 326 - -
Tan04g0017 348 ProSitePatterns Zinc finger C2H2 type domain signature. 58 80 IPR013087 -
Tan04g0017 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 85 IPR013087 -
Tan04g0017 348 Gene3D Classic Zinc Finger 113 140 - -
Tan04g0017 348 Gene3D Classic Zinc Finger 56 81 - -
Tan04g0017 348 ProSitePatterns Zinc finger C2H2 type domain signature. 117 139 IPR013087 -
Tan04g0017 348 SMART c2h2final6 145 169 IPR013087 -
Tan04g0017 348 SMART c2h2final6 208 233 IPR013087 -
Tan04g0017 348 SMART c2h2final6 56 80 IPR013087 -
Tan04g0017 348 SMART c2h2final6 115 139 IPR013087 -
Tan04g0017 348 SMART c2h2final6 85 109 IPR013087 -
Tan04g0017 348 Gene3D Classic Zinc Finger 82 112 - -
Tan04g0017 348 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 40 312 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Tan04g0017 348 Gene3D Classic Zinc Finger 182 249 - -
Tan04g0017 348 FunFam Zinc finger transcription factor YY1 183 250 - -
Tan04g0017 348 SUPERFAMILY beta-beta-alpha zinc fingers 139 172 IPR036236 -
Tan04g0017 348 Gene3D Classic Zinc Finger 141 170 - -
Tan04g0017 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 174 IPR013087 -
Tan04g0017 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 144 IPR013087 -
Tan04g0017 348 SUPERFAMILY beta-beta-alpha zinc fingers 96 148 IPR036236 -
Tan04g0017 348 ProSitePatterns Zinc finger C2H2 type domain signature. 147 170 IPR013087 -
Tan04g0017 348 MobiDBLite consensus disorder prediction 185 199 - -
Tan04g0017 348 FunFam zinc finger transcription factor YY1 56 81 - -
Tan04g0017 348 MobiDBLite consensus disorder prediction 333 348 - -
Tan04g0017 348 MobiDBLite consensus disorder prediction 235 348 - -
Tan04g0017 348 FunFam Putative zinc finger protein 143 82 112 - -
Tan04g0017 348 FunFam Zinc finger protein 410 113 140 - -
Tan04g0017 348 ProSitePatterns Zinc finger C2H2 type domain signature. 87 109 IPR013087 -
Tan04g0017 348 SUPERFAMILY beta-beta-alpha zinc fingers 203 231 IPR036236 -
Tan04g0017 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Tan04g0017 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 114 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0015 Tan-Chr4:243018 Tan04g0017 Tan-Chr4:243018 3.60E-130 dispersed
Tan04g0016 Tan-Chr4:243018 Tan04g0017 Tan-Chr4:243018 4.40E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27140 PF00096 zf-C2H2 0.0046 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0017 - - - 0.0