Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0036 ATGCCTGCAGCAAACAACAACTCCGCCATGGCTACTTGTGTTCGAGATTTGGTAGAAGGCGAGGAACACATTTTCCGCAGCCAACTTCCTGAAGTCCAAGTGCCTGATGATATCACATTGCCAGAGTTTGTACTCCAGAATGCTGAATTATATGCTGATAATGTGGCATTTGTGGAAGCCGTGAACGGAAAGTCGTATACTTACCGTGAAGTCGTGAGAGACACAAAAAGGTTTGCTAAGGCCTTGAGCTCTCTGAGGTTGAGGAAGGGGCAGGTGGTTATTGTTGTTCTACCCAACGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCAGCAGCTCACATATCAGAAATCAAAAAGCAGGTGGAGACAGCAGAAGCCAAACTCGTTGTCACAAGCAGTGCAAACTTTGAAAAGGTGAAGGAACTAAAGTTACCAGTGATCGTGTTGGGCGAGGAACTGATTGAAGGTTCCATGAACTGGCACAAACTGCTTGAAGCTGCAGATCGTGCAGGCAACAATTTTGTCAAAGAAGATATCAAGCAGACTGATTTATGTGCTCTTCCTTTCTCATCAGGCACCACAGGAATTTCCAAAGGCGTAATGCTAACTCACCGAAATCTAGTGGCTAACTTGTGCTCTACGCTCTCCGGTGTGCCGCAAGAAACGGAGGGCAAGGTCACGACGTTAGGCCTAATTCCGTTCTTCCATATTTACGGGATTACTGGAATATGTTGTGCCACACTTAGAAACAAGGGGAAAGTTGTGGTGATGGGAAGATTTGATCTCAGAACCTTCATCAATGCCCTGATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCTTGGCTTTGGTTAAGAATCCTATAGTGGAGGAATTCGATCTTAGCAGTCTTAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCAGAACTTCAAACTGCGTTCGAGAAAAAATTCCCAGGCGTTGATGTTCAAGAGGCATATGGACTAACCGAGCACAGCTGCATCACTCTCAACTATGGAAGTATAGGCAAAGAGAATATCACTTCGAAGAAAAACACAGTTGGCCGCATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCCGACAGCGGCAGGTCTCTGCCAAAGAATACTCCAGGTGAAGTCTGTGTAAGAAGCCAGTGTGTGATGCAAGGCTACTACAAAAATGAAGAGGAGACTTCAAGGACCATTGATAACAAAGGCTGGATGCACACTGGCGACATCGGATACATTGATGACGATGGCGATGTGTTTATTGTGGATCGTATTAAAGAGTTGATCAAGTACAAAGGCTTTCAAGTTCCTCCAGCTGAGTTAGAGGCAATCCTTCTTACTCATCCCTCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGACAAAGAAGCCGGTGAGATTCCAGCAGCAAGCATCGTGATGGCTCCAAATGCAAAAGAAACTGAAGATGAAATAATCAAATATGTCGCCTCAAATGTTGCACATTACAAGAAAGTTAGGCTCGTTCATTTCGTGGACAGTATCCCGAAATCGCCTTCTGGGAAAGTTATGAGAAGGTTGATCAAAGAGAAGATGATCGAAAAGATTCGAGCCGAGTCTGCCTCTTGA 1680 45.36 MPAANNNSAMATCVRDLVEGEEHIFRSQLPEVQVPDDITLPEFVLQNAELYADNVAFVEAVNGKSYTYREVVRDTKRFAKALSSLRLRKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVETAEAKLVVTSSANFEKVKELKLPVIVLGEELIEGSMNWHKLLEAADRAGNNFVKEDIKQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSTLSGVPQETEGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSSLKLQAIMTAAAPLAPELQTAFEKKFPGVDVQEAYGLTEHSCITLNYGSIGKENITSKKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEVCVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVPPAELEAILLTHPSIEDAAVVPLPDKEAGEIPAASIVMAPNAKETEDEIIKYVASNVAHYKKVRLVHFVDSIPKSPSGKVMRRLIKEKMIEKIRAESAS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 356144 358478 + Tan0009667.1 Tan04g0036 748440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0036 559 CDD 4CL 34 543 - -
Tan04g0036 559 Pfam AMP-binding enzyme 46 413 IPR000873 -
Tan04g0036 559 SUPERFAMILY Acetyl-CoA synthetase-like 29 552 - -
Tan04g0036 559 Gene3D - 451 553 IPR045851 -
Tan04g0036 559 FunFam 4-coumarate--CoA ligase 2 451 552 - -
Tan04g0036 559 FunFam Long-chain-fatty-acid--CoA ligase FadD 26 450 - -
Tan04g0036 559 Pfam AMP-binding enzyme C-terminal domain 464 539 IPR025110 -
Tan04g0036 559 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Tan04g0036 559 Gene3D - 22 450 IPR042099 -
Tan04g0036 559 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 545 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0036 Tan-Chr4:356144 Tan04g2483 Tan-Chr4:83652448 2.00E-116 dispersed
Tan04g0036 Tan-Chr4:356144 Tan04g0037 Tan-Chr4:356144 1.30E-232 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0036 K01904 - csv:101220731 984.556