Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0037 ATGCCTGCAGCAAACAACAACTCCGCCATGGCTACTTGTGTTCGAGATTTGGTAGAAGGCGAGGAACACATTTTCCGCAGCCAACTTCCTGAAGTCCAAGTGCCTGATGATATCACATTGCCAGAGTTTGTACTCCAGAATGCTGAATTATATGCTGATAATGTGGCATTTGTGGAAGCCGTGAACGGAAAGTCGTATACTTACCGTGAAGTCGTGAGAGACACAAAAAGGTTTGCTAAGGCCTTGAGCTCTCTGAGGTTGAGGAAGGGGCAGGTGGTTATTGTTGTTCTACCCAACGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCAGCAGCTCACATATCAGAAATCAAAAAGCAGGTGGAGACAGCAGAAGCCAAACTCGTTGTCACAAGCAGTGCAAACTTTGAAAAGGTGAAGGAACTAAAGTTACCAGTGATCGTGTTGGGCGAGGAACTGATTGAAGGTTCCATGAACTGGCACAAACTGCTTGAAGCTGCAGATCGTGCAGGCAACAATTTTGTCAAAGAAGATATCAAGCAGACTGATTTATGTGCTCTTCCTTTCTCATCAGGCACCACAGGAATTTCCAAAGGCGTAATGCTAACTCACCGAAATCTAGTGGCTAACTTGTGCTCTACGCTCTCCGGTGTGCCGCAAGAAACGGAGGGCAAGGTCACGACGTTAGGCCTAATTCCGTTCTTCCATATTTACGGGATTACTGGAATATGTTGTGCCACACTTAGAAACAAGGGGAAAGTTGTGGTGATGGGAAGATTTGATCTCAGAACCTTCATCAATGCCCTGATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCTTGGCTTTGGTTAAGAATCCTATAGTGGAGGAATTCGATCTTAGCAGTCTTAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCAGAACTTCAAACTGCGTTCGAGAAAAAATTCCCAGGCGTTGATGTTCAAGAGGCATATGGACTAACCGAGCACAGCTGCATCACTCTCAACTATGGAAGTATAGGCAAAGAGAATATCACTTCGAAGAAAAACACAGTTGGCCGCATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCCGACAGCGGCAGGTCTCTGCCAAAGAATACTCCAGGTGAAGTCTGTGTAAGAAGCCAGTGTGTGATGCAAGGTACGGAACATAGACTGATGTGGAAAAATTGCCCTGAGATCTCCAATTAA 1281 45.59 MPAANNNSAMATCVRDLVEGEEHIFRSQLPEVQVPDDITLPEFVLQNAELYADNVAFVEAVNGKSYTYREVVRDTKRFAKALSSLRLRKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVETAEAKLVVTSSANFEKVKELKLPVIVLGEELIEGSMNWHKLLEAADRAGNNFVKEDIKQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSTLSGVPQETEGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSSLKLQAIMTAAAPLAPELQTAFEKKFPGVDVQEAYGLTEHSCITLNYGSIGKENITSKKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEVCVRSQCVMQGTEHRLMWKNCPEISN 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 356144 358836 + Tan0009667.2 Tan04g0037 748441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0037 426 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 411 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Tan04g0037 426 Gene3D - 22 419 IPR042099 -
Tan04g0037 426 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Tan04g0037 426 Pfam AMP-binding enzyme 46 411 IPR000873 -
Tan04g0037 426 SUPERFAMILY Acetyl-CoA synthetase-like 29 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0037 Tan-Chr4:356144 Tan06g0498 Tan-Chr6:3810324 2.10E-65 dispersed
Tan04g0036 Tan-Chr4:356144 Tan04g0037 Tan-Chr4:356144 1.30E-232 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0037 K01904 - csv:101220731 732.25