Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0039 ATGTCTCAGGTTGATAGCAGGAATTCCTCTGCAGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGACTGGACTTGTCCTAGTTGTGGAAATGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAGCCACGTCCCGCTGATCATAATTCTAAATCTGCTGCCAAGCCTGTTCAAGCTCCACAGGGTTACTCCTATTCTGCCCCTTACCTGGGTTCTGGTGCACCCTCTTCAATGTATCCTGGTGTACCACCTTATGGTTCTTCTATATTCAACGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACAGCAGCCGATTTTCTGCTGGCAGCCCCTACAGGCCTTTGCACCTATCTGGGCCTGCACCTTATTCTAGTGGATCTATGATGGGAAATAGTGCAGTGTATGGTATGCCACCCATAATGGATCGCTATGGCATGGCTTTGCCCATGGGCCCTGGCACCATGGGTCCAAGGCCTGGTTTCTTTCCCGATGATATGTCTCAGAAGAAGGGTGCAGACACTACTCGTGACAATGATTGGCCATGCCCGAAATGTGGAAACATCAACTTCTCATTTAGAACTGTCTGTAACATGAGGAAATGCAATACACCAAAGCCTGGGTCACAGGGTTCCAAAAATGACAAAAGTTCTAAACAAAAGACGCCGGAGGGTAGCTGGAAGTGTGAGAAATGTAACAACATAAACTATCCATTCCGAACCAAATGCAATAGACAAAATTGTGGAGCTGATAAGCCAGCGGAGTCAGAGAAATCCCCATCACCTGCACAGGATGAAAATGAACAGTTGATTCCATACAATTTGATTAACAAGATCATTTATGAACCACTTGAAAAGGGGAACCCTTTTGGTAAATTATCGGTGGTAGTGGTACTTTCCTTGAGTTCTAGAACATTTTTTTTTTTAAATTTTGTTTTTCCCTTTCATGCATTAATTTGTCATTGTCCAGAGTTCTATCTTCCAGCGTTGCTCAATATGGGTGTCTGA 1056 44.03 MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPVQAPQGYSYSAPYLGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYSSRFSAGSPYRPLHLSGPAPYSSGSMMGNSAVYGMPPIMDRYGMALPMGPGTMGPRPGFFPDDMSQKKGADTTRDNDWPCPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKSSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSPAQDENEQLIPYNLINKIIYEPLEKGNPFGKLSVVVVLSLSSRTFFFLNFVFPFHALICHCPEFYLPALLNMGV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 368571 372447 - Tan0010246.1 Tan04g0039 748443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0039 351 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Tan04g0039 351 SMART zf_4 195 221 IPR001876 -
Tan04g0039 351 SMART zf_4 241 267 IPR001876 -
Tan04g0039 351 SMART zf_4 24 50 IPR001876 -
Tan04g0039 351 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Tan04g0039 351 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Tan04g0039 351 Pfam Zn-finger in Ran binding protein and others 194 224 IPR001876 -
Tan04g0039 351 PANTHER RNA BINDING PROTEIN 134 230 IPR034870 GO:0003712(PANTHER)|GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan04g0039 351 FunFam ranBP2-type zinc finger protein At1g67325-like 15 54 - -
Tan04g0039 351 MobiDBLite consensus disorder prediction 11 25 - -
Tan04g0039 351 SUPERFAMILY Ran binding protein zinc finger-like 188 225 IPR036443 -
Tan04g0039 351 SUPERFAMILY Ran binding protein zinc finger-like 233 270 IPR036443 -
Tan04g0039 351 MobiDBLite consensus disorder prediction 1 29 - -
Tan04g0039 351 Gene3D - 230 271 - -
Tan04g0039 351 Gene3D - 184 225 - -
Tan04g0039 351 Gene3D - 14 54 - -
Tan04g0039 351 MobiDBLite consensus disorder prediction 220 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0039 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40