Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0044 ATGGCTTCGGCTTGTGCTTCTTCTGCCATTGCGGCTGTGGCAATCTCTTCAACCAGTTCCCAGAAGAATGGTTGCCCCAAGGCTGCTGCTAATTTCATAACCGGGAAGAAGCTGAGGCTGAGAAAGTACACCACCGCTGCTGTCGCTCCTCGATCAGCTCCCGTGTGCGCCGCTGCTGACCCCGACCGACCCCTCTGGTTCCCGGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTTTCTTCTGATCCGGAGAGCTTGAGATGGAACCAGCAGGCGGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGAATTTTCATCCCGGAGTTCTTGACAAAGATCGGAATTTTGAACACTCCATCATGGTACTCCGCCGGAGAATTGGAATACTTCACCGACACCACCACTCTCTTCGTCGTCGAACTCATTTTCATCGGTTGGGCCGAAGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAATACCGACCCGATATTCCCGAACAACAAGCTGACCGGAACCGACGTCGGGTACCCGGGAGGGCTGTGGTTCGACCCACTCGGGTGGGGCAGCGGGTCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGATTGGCTATGTTGGCCGTGATGGGCGCGTGGTTCCAACACATTTATACTGGAACCGGTCCCATTGACAATCTTTTCGCCCACCTCGCCGATCCTGGCCACGCCACTGTCTTTGCCGCTTTCACACCCAAGTGA 807 57.62 MASACASSAIAAVAISSTSSQKNGCPKAAANFITGKKLRLRKYTTAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 410879 413017 - Tan0017128.1 Tan04g0044 748448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0044 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Tan04g0044 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Tan04g0044 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Tan04g0044 268 SUPERFAMILY Chlorophyll a-b binding protein 59 266 - -
Tan04g0044 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0044 Tan-Chr4:410879 Tan09g1055 Tan-Chr9:62798005 2.60E-85 dispersed
Tan04g0044 Tan-Chr4:410879 Tan09g2110 Tan-Chr9:71467726 2.30E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0044 K08908 - csv:101214055 522.702