Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g0052 | ATGGCCGACAATTTTCCCAAGAACATCCTCCAGAGCACTGCTCTTCTCCAGTATATACTGGAAGCCAATGCCTATCCGAGAGAGCACGAACAATTGAAGGAACTCAGAGAAACCACCTTCGGAAAGTTCGACAAGTCCCGGAGCGCGATGTGTATACCGGCGGATCAAGGATTGTTTCTATCAATGCTTCTGAAACTGATGAATGCAAAGAAAACGATAGAGATCGGCGTATTCACTGGCTATTCGCTCCTAACCACTGCGCTTGCACTGCCCGTTGATGGCCAGATAATAGCTATTGATCCAGATAGAGAATCATTTGAGATTGGTTTGCCATTTATCAAAAAGGCAGGAGTTGATCACAAGATCAAATTTCTAGAATCTCAAGCATTGGTTGTCCTGAATGACCTCCTCAATGATGAGAAAGAAGGAGAGTTTGATTTTGCATTTGTGGATGCTAAGAAAGTAGAGTACATTAAATATCATGAGTTGCTTCTAAAATTGGTGAAGGTAGGTGGAGTAATTGCCTATGATAACACTCTGTGGTTTGGATCTGTGGCACTGAGCGACGACGTCGTTGAGGAAGTGTTGAAGGCAAATAGAATTCTTACACGAGAATTCAATGCTTTTCTAGTCAATGACTCACGCGTGGAGATAACTCTCCTCTCCATTGGAGATGGCTTCACTCTCTGCAGGCGTATTAAGTAA | 705 | 43.26 | MADNFPKNILQSTALLQYILEANAYPREHEQLKELRETTFGKFDKSRSAMCIPADQGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPVDGQIIAIDPDRESFEIGLPFIKKAGVDHKIKFLESQALVVLNDLLNDEKEGEFDFAFVDAKKVEYIKYHELLLKLVKVGGVIAYDNTLWFGSVALSDDVVEEVLKANRILTREFNAFLVNDSRVEITLLSIGDGFTLCRRIK | 234 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 478879 | 481785 | - | Tan0020610.1 | Tan04g0052 | 748456 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g0052 | 234 | Gene3D | Vaccinia Virus protein VP39 | 2 | 234 | IPR029063 | - | |
| Tan04g0052 | 234 | PANTHER | O-METHYLTRANSFERASE-RELATED | 7 | 233 | IPR050362 | GO:0008757(PANTHER) | |
| Tan04g0052 | 234 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 15 | 232 | IPR029063 | - | |
| Tan04g0052 | 234 | Pfam | O-methyltransferase | 24 | 233 | IPR002935 | GO:0008171(InterPro) | |
| Tan04g0052 | 234 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 8 | 233 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g0052 | Tan-Chr4:478879 | Tan04g0054 | Tan-Chr4:483406 | 4.30E-113 | dispersed | |
| Tan04g0052 | Tan-Chr4:478879 | Tan04g0053 | Tan-Chr4:478879 | 4.00E-127 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g0052 | K00588 | - | csv:101212121 | 348.977 |