Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g0054 | ATGCTCTCATCCAGAAAGTATCTTACCCAAGGAATCCCTTATTGCAAGCATCCAAGCACGTTTGTTGCAGAGGTCATGGCCGACGATTTTCCCAAGAAGAACATCCTCCAGAGCACTGCTCTTCTCCAGTATATACTGGAAGCCAATGCCTATCCGAGAGAGCATGAACAGTTGAAGGAACTCAGAGAAACCACCTTCGGAAAGTTCGACAAGTCCCGGAGCGTGATGAGTGTACCGGCGGATCAAGGATTGTTTCTATCAATGCTTCTGAAACTGATGAATGCAAAGAAAACGATAGAGATCGGCGTATTCACTGGCTATTCGCTCCTAACCACTGCGCTTGCACTGCCCGCTGATGGCCAGATAACAGCCATTGATGTGAATAGAGAATCATTCGAGATTGGCTTGCCATTTATCAAAAAGGCAGGAGTTGATCATAAGATCAATTTTGTGGAATCCCAGGCATTGGTTGTCCTGAATGACATCCTCAATGATAAAAAAGAAGGAGAGTTTGATTTTGCATTTGTGGATGCTAACAAAGCAGAGTACATTAAATATCACGAGTTGCTTCTACAACTGGTGAAAGTAGGAGGAGTAATTGCCTATGATAACACTTTGTGGTTTGGATCTGTGGCGCTGAGCGACGACGTCGTTCCAGAAGACTTGAAGGTAAATAGAAGTCATATTCGAGAACTCAATGCTTTTCTAATTAATGACTCACGTGTGGAGATAGCTCTCCTCTCTATTGGAGATGGCCTCACCCTCTGCAGGCGGATTAAGTAA | 783 | 44.32 | MLSSRKYLTQGIPYCKHPSTFVAEVMADDFPKKNILQSTALLQYILEANAYPREHEQLKELRETTFGKFDKSRSVMSVPADQGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVNRESFEIGLPFIKKAGVDHKINFVESQALVVLNDILNDKKEGEFDFAFVDANKAEYIKYHELLLQLVKVGGVIAYDNTLWFGSVALSDDVVPEDLKVNRSHIRELNAFLINDSRVEIALLSIGDGLTLCRRIK | 260 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 483406 | 494288 | - | Tan0005715.1 | Tan04g0054 | 748458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g0054 | 260 | Gene3D | Vaccinia Virus protein VP39 | 24 | 260 | IPR029063 | - | |
| Tan04g0054 | 260 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 34 | 259 | IPR002935 | GO:0008171(InterPro) | |
| Tan04g0054 | 260 | CDD | AdoMet_MTases | 99 | 202 | - | - | |
| Tan04g0054 | 260 | PANTHER | O-METHYLTRANSFERASE-RELATED | 32 | 259 | IPR050362 | GO:0008757(PANTHER) | |
| Tan04g0054 | 260 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 41 | 258 | IPR029063 | - | |
| Tan04g0054 | 260 | Pfam | O-methyltransferase | 50 | 259 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g0947 | Tan-Chr1:9138611 | Tan04g0054 | Tan-Chr4:483406 | 2.70E-28 | dispersed | |
| Tan01g0948 | Tan-Chr1:9138788 | Tan04g0054 | Tan-Chr4:483406 | 5.80E-36 | dispersed | |
| Tan02g0912 | Tan-Chr2:10603751 | Tan04g0054 | Tan-Chr4:483406 | 7.70E-68 | dispersed | |
| Tan03g1550 | Tan-Chr3:71824513 | Tan04g0054 | Tan-Chr4:483406 | 6.70E-64 | dispersed | |
| Tan04g0052 | Tan-Chr4:478879 | Tan04g0054 | Tan-Chr4:483406 | 4.30E-113 | dispersed | |
| Tan04g0054 | Tan-Chr4:483406 | Tan04g0056 | Tan-Chr4:483406 | 4.80E-113 | dispersed | |
| Tan04g0053 | Tan-Chr4:478879 | Tan04g0054 | Tan-Chr4:483406 | 1.90E-111 | tandem | |
| Tan04g0054 | Tan-Chr4:483406 | Tan04g0055 | Tan-Chr4:483406 | 6.10E-100 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g0054 | K00588 | - | csv:101212121 | 365.925 |