Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g0055 | ATGAGTGTACCGGCGGATCAAGGATTGTTTCTATCAATGCTTCTGAAACTGATGAATGCAAAGAAAACGATAGAGATCGGCGTATTCACTGGCTATTCGCTCCTAACCACTGCGCTTGCACTGCCCGCTGATGGCCAGATAACAGCCATTGATGTGAATAGAGAATCATTCGAGATTGGCTTGCCATTTATCAAAAAGGCAGGAGTTGATCATAAGATCAATTTTGTGGAATCCCAGGCATTGGTTGTCCTGAATGACATCCTCAATGATAAAAAAGAAGGAGAGTTTGATTTTGCATTTGTGGATGCTAACAAAGCAGAGTACATTAAATATCACGAGTTGCTTCTACAACTGGTGAAAGTAGGAGGAGTAATTGCCTATGATAACACTTTGTGGTTTGGATCTGTGGCGCTGAGCGACGACGTCGTTCCAGAAGACTTGAAGGTAAATAGAAGTCATATTCGAGAACTCAATGCTTTTCTAATTAATGACTCACGTGTGGAGATAGCTCTCCTCTCTATTGGAGATGGCCTCACCCTCTGCAGGCGGATTAAGTAA | 558 | 42.65 | MSVPADQGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVNRESFEIGLPFIKKAGVDHKINFVESQALVVLNDILNDKKEGEFDFAFVDANKAEYIKYHELLLQLVKVGGVIAYDNTLWFGSVALSDDVVPEDLKVNRSHIRELNAFLINDSRVEIALLSIGDGLTLCRRIK | 185 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 483406 | 494288 | - | Tan0005715.2 | Tan04g0055 | 748459 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g0055 | 185 | Pfam | O-methyltransferase | 1 | 184 | IPR002935 | GO:0008171(InterPro) | |
| Tan04g0055 | 185 | Gene3D | Vaccinia Virus protein VP39 | 1 | 185 | IPR029063 | - | |
| Tan04g0055 | 185 | CDD | AdoMet_MTases | 24 | 127 | - | - | |
| Tan04g0055 | 185 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 3 | 183 | IPR029063 | - | |
| Tan04g0055 | 185 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 1 | 184 | IPR002935 | GO:0008171(InterPro) | |
| Tan04g0055 | 185 | PANTHER | O-METHYLTRANSFERASE-RELATED | 1 | 184 | IPR050362 | GO:0008757(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g0053 | Tan-Chr4:478879 | Tan04g0055 | Tan-Chr4:483406 | 9.30E-87 | dispersed | |
| Tan04g0055 | Tan-Chr4:483406 | Tan04g0057 | Tan-Chr4:487814 | 1.30E-43 | dispersed | |
| Tan04g0054 | Tan-Chr4:483406 | Tan04g0055 | Tan-Chr4:483406 | 6.10E-100 | tandem | |
| Tan04g0055 | Tan-Chr4:483406 | Tan04g0056 | Tan-Chr4:483406 | 4.40E-68 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g0055 | K00588 | - | csv:101212121 | 291.197 |