Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0056 ATGCTCTCATCCAGAAAGTATCTTACCCAAGGAATCCCTTATTGCAAGCATCCAAGCACGTTTGTTGCAGAGGTCATGGCCGACGATTTTCCCAAGAAGAACATCCTCCAGAGCACTGCTCTTCTCCAGTATATACTGGAAGCCAATGCCTATCCGAGAGAGCATGAACAGTTGAAGGAACTCAGAGAAACCACCTTCGGAAAGTTCGACAAGTCCCGGAGCGTGATGAGTGTACCGGCGGATCAAGGATTGTTTCTATCAATGCTTCTGAAACTGATGAATGCAAAGAAAACGATAGAGATCGGCGTATTCACTGGCTATTCGCTCCTAACCACTGCGCTTGCACTGCCCGCTGATGGCCAGAAAAAAGAAGGAGAGTTTGATTTTGCATTTGTGGATGCTAACAAAGCAGAGTACATTAAATATCACGAGTTGCTTCTACAACTGGTGAAAGTAGGAGGAGTAATTGCCTATGATAACACTTTGTGGTTTGGATCTGTGGCGCTGAGCGACGACGTCGTTCCAGAAGACTTGAAGGTAAATAGAAGTCATATTCGAGAACTCAATGCTTTTCTAATTAATGACTCACGTGTGGAGATAGCTCTCCTCTCTATTGGAGATGGCCTCACCCTCTGCAGGCGGATTAAGTAA 651 45.47 MLSSRKYLTQGIPYCKHPSTFVAEVMADDFPKKNILQSTALLQYILEANAYPREHEQLKELRETTFGKFDKSRSVMSVPADQGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQKKEGEFDFAFVDANKAEYIKYHELLLQLVKVGGVIAYDNTLWFGSVALSDDVVPEDLKVNRSHIRELNAFLINDSRVEIALLSIGDGLTLCRRIK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 483406 494288 - Tan0005715.3 Tan04g0056 748460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0056 216 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 214 IPR029063 -
Tan04g0056 216 PANTHER O-METHYLTRANSFERASE-RELATED 121 215 IPR050362 GO:0008757(PANTHER)
Tan04g0056 216 Pfam O-methyltransferase 50 121 IPR002935 GO:0008171(InterPro)
Tan04g0056 216 Pfam O-methyltransferase 122 215 IPR002935 GO:0008171(InterPro)
Tan04g0056 216 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 215 IPR002935 GO:0008171(InterPro)
Tan04g0056 216 Gene3D Vaccinia Virus protein VP39 24 120 IPR029063 -
Tan04g0056 216 Gene3D Vaccinia Virus protein VP39 121 216 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0056 K00588 - - csv:101212121 279.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0054 Tan-Chr4:483406 Tan04g0056 Tan-Chr4:483406 4.80E-113 dispersed
Tan04g0055 Tan-Chr4:483406 Tan04g0056 Tan-Chr4:483406 4.40E-68 tandem
Tan04g0056 Tan-Chr4:483406 Tan04g0057 Tan-Chr4:487814 2.60E-64 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1235 . . . . . . . . . Cmo18g00689 . Cma18g00702 . . . . . Bhi07g01918 Tan04g0056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001717 0 4 0 0 0 1 0 1 1 1 1 4 4 1 1 5 4 3 1 4 1 0 1 2 3 2 1 4 6 6 62