Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0057 ATGCTCTCATCCAGAAAGTATCTTACCCAAGGAATCCCTTATTGCAAGCATCCAAGCACGTTTGTTGCAGAGGTCATGGCCGACGATTTTCCCAAGAAGAACATCCTCCAGAGCACTGCTCTTCTCCAGTATATACTGGAAGCCAATGCCTATCCGAGAGAGCATGAACAGTTGAAGGAACTCAGAGAAACCACCTTCGGAAAGTTCGACAAGTCCCGGAGCGTGATGAGTGTACCGGCGGATCAAGGATTGTTTCTATCAATGCTTCTGAAACTGATGAATGCAAAGAAAACGATAGAGATCGGCGTATTCACTGGCTATTCGCTCCTAACCACTGCGCTTGCACTGCCCGCTGATGGCCAGATAACAGCCATTGATGTGAATAGAGAATCATTCGAGATTGGCTTGCCATTTATCAAAAAGGCAGGAGTTGATCATAAGATCAATTTTGTGGAATCCCAGGCATTGGTTGTCCTGAATGACATCCTCAATGATCATTACTTCAACAAAAATTTCGGCGACAACTCCAACAACTACACCAGTGACCCGACTACAGCTAATGGCTACCTCTGA 573 45.72 MLSSRKYLTQGIPYCKHPSTFVAEVMADDFPKKNILQSTALLQYILEANAYPREHEQLKELRETTFGKFDKSRSVMSVPADQGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVNRESFEIGLPFIKKAGVDHKINFVESQALVVLNDILNDHYFNKNFGDNSNNYTSDPTTANGYL 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 487814 494288 - Tan0005715.4 Tan04g0057 748461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0057 190 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 165 IPR029063 -
Tan04g0057 190 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 34 190 IPR002935 GO:0008171(InterPro)
Tan04g0057 190 PANTHER O-METHYLTRANSFERASE-RELATED 32 172 IPR050362 GO:0008757(PANTHER)
Tan04g0057 190 Pfam O-methyltransferase 50 170 IPR002935 GO:0008171(InterPro)
Tan04g0057 190 Gene3D Vaccinia Virus protein VP39 24 181 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0055 Tan-Chr4:483406 Tan04g0057 Tan-Chr4:487814 1.30E-43 dispersed
Tan04g0056 Tan-Chr4:483406 Tan04g0057 Tan-Chr4:487814 2.60E-64 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0057 K00588 - csv:101212121 227.639