Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0068 ATGGACAAGAATCTGTTCTTCCTTGTTATCTTTTTCGTCTCGTTTTTTCACTTTCAGGTCTCGTTTAGGGTTTTAGCTCTCTCGCCGGACGGTCTCTCGCTTCTCTCTCTCAAGTCGGCGGTCGATCAGTCGCCCGATTCCTCTGTTTTCTCCGATTGGAACGAGGATGACTCCACGCCTTGCCGATGGTCTGGCATTTCTTGCATGAATGTTTCCGGTGATTCGCGTGTCGTTGGGATTGCTCTTTCCGGTAAGAATCTCCATGGCTACATTCCTTCTGAGCTTGGGTCGCTTGTTTATCTCCGGCGATTGAACCTCCATAACAACAATTTCTACGGCTCGATACCGGAGCAGTTGTTTAATGCTACCTCATTGCATAGCCTATTTCTCTATAGTAATAACCTCTCCGGTCCTTTCCCCCCTTCGATCTGCAACATTCCGAGGCTTCAAAACCTCGATCTCTCTAACAATTCTCTCGCCGGACCAATCCCCGACGAACTGAAGAATTGCAAGCAATTGCAGCGTTTAATACTCGCCAGAAATCAATTCGAGGGAGAAATTCCTTCTGGTGTGTGGTCCGGGATGGGTAATTTACTTCAACTCGATCTCTCATCCAACGATTTCGGCGGACCGATTCCGGAGGATTTGGGGGAACTGAAGACACTTTCCGGTACGCTCAACTTGTCCTTCAATCATTTATCGGGAAAAATTCCCAAGACGCTTGGAGATTTGCCGGTGACAGTGAGTTTCGATCTCCGGAGCAACAATTTGAGTGGAAGCATACCTCAGACGGGTTCTTTTGCGAATCAGGGACCAACTGCATTTCTCAATAATCCAAAGTTGTGCGGATTTCCTCTTCAGAAATCTTGCGAGAGTTCAGAACGTGGCTCACCAGAAAATCCGGATTCTAGGCCATCCTACATTGCCCCTAGAAAAGGCTTGAGCGCCGGACTAATCATTCTCATCTCCGCCGCCGACGCCGCCGGAGTGGCGTTTATCGGCCTAGTAATAGTATACATATACTGGCGAAGAAAAGACAATTCGAACGGCTGTAGCTGTACGGCAAAAGGAAAATTCGGAGGAAACCAGAAAAACCATCTGTGCAATTTTCCTTGTATGAATGGACATGATAAGAACGAGGAATCCGAAATGGAGGAACAAGAGAACAGTGACAGAAGCAGAGAAGAAGGGGGGCTTGTAGCCGTAGACAAAGGCTTTACGTTCGAGCTCGACGAGCTGCTGAGAGCATCGGCCTACGTGCTGGGAAAGAGTGGACTGGGGATTGTGTACAAAGTGGTGCTCGGAAATGGGATTCCGGTGGCCGTACGGCGGCTGGGCGAAGGCGGTGAACAGAGGTATAAGGAATTCGCGGCGGAGGTGCAGGCCATTGGAAGGGTAAAGCATCCCAATATTGTGAAACTGAGAGCCTACTATTGGGCGCCGGATGAGAAGCTTCTGATCAGTGATTTTATCTCCAATGGGAATTTGGCCTCTGCACTTCGCGGGAGAAACGGGCAACCATCTTCAATCCTTTCATGGTCAACAAGACTACGAATTGCCAAGGGAACCGCAAGGGGTTTGGCCTATCTACACGAGTGCAGCCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCAGCCCCACATCTCTGACTTCGGCCTCAACCGTTTGATCAGCATCACCGGCAACAACCCCTCCTCGTCCGGCGGCCTCATCGGCGGCGCCTTCTCCTATCTCAAATCCGTCCAAACCGACCGCAACAACAACTACTGCGCGCCGGAGGCCCGAGCCCCCGCCGGCCGCCCCACCCAGAAATGGGACGTCTATTCCTTCGGCGTCATGGTCCTCGAATTGCTCACCGGAAAGTCGCCGGAGCTTTCTCCGAACACGTCAACTTCTTTGGAGATTCCAGATTTGGTGAGGTGGGTCAGGAAAGGATTTGAAGAAGCTAAGCCGTTGTCAGATTTGGTTGACCCTGCTCTGCTACAAGAAGTACATGCCAAGAAAGAGGTGCTCGCCGTATTCCACGTGGCGCTCGCCTGTACAGAGAGTGACCCGGAAGTTCGGCCCAGAATGAAAACGGTGTCGGAGAGTTTCGACAGGATTGGATCGTGA 2142 50.93 MDKNLFFLVIFFVSFFHFQVSFRVLALSPDGLSLLSLKSAVDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNFYGSIPEQLFNATSLHSLFLYSNNLSGPFPPSICNIPRLQNLDLSNNSLAGPIPDELKNCKQLQRLILARNQFEGEIPSGVWSGMGNLLQLDLSSNDFGGPIPEDLGELKTLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPKLCGFPLQKSCESSERGSPENPDSRPSYIAPRKGLSAGLIILISAADAAGVAFIGLVIVYIYWRRKDNSNGCSCTAKGKFGGNQKNHLCNFPCMNGHDKNEESEMEEQENSDRSREEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGRNGQPSSILSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRNNNYCAPEARAPAGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPEVRPRMKTVSESFDRIGS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 543116 548078 - Tan0010599.1 Tan04g0068 748472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0068 713 Gene3D Ribonuclease Inhibitor 191 292 IPR032675 -
Tan04g0068 713 Pfam Protein kinase domain 420 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0068 713 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515(InterPro)
Tan04g0068 713 SUPERFAMILY L domain-like 32 287 - -
Tan04g0068 713 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 193 - -
Tan04g0068 713 Gene3D Phosphorylase Kinase; domain 1 406 490 - -
Tan04g0068 713 FunFam Os07g0541700 protein 499 578 - -
Tan04g0068 713 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Tan04g0068 713 ProSiteProfiles Protein kinase domain profile. 415 711 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0068 713 FunFam Leucine-rich repeat receptor-like protein kinase 398 490 - -
Tan04g0068 713 CDD STKc_IRAK 421 711 - -
Tan04g0068 713 Pfam Leucine Rich Repeat 197 219 IPR001611 GO:0005515(InterPro)
Tan04g0068 713 Pfam Leucine Rich Repeat 225 244 IPR001611 GO:0005515(InterPro)
Tan04g0068 713 SMART serkin_6 419 711 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0068 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0068 713 MobiDBLite consensus disorder prediction 288 308 - -
Tan04g0068 713 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Tan04g0068 713 FunFam Leucine-rich repeat receptor-like protein kinase 197 292 - -
Tan04g0068 713 Gene3D Transferase(Phosphotransferase) domain 1 491 713 - -
Tan04g0068 713 SUPERFAMILY Protein kinase-like (PK-like) 420 705 IPR011009 -
Tan04g0068 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 171 710 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0324 Tan-Chr3:47240675 Tan04g0068 Tan-Chr4:543116 4.00E-100 dispersed
Tan04g0068 Tan-Chr4:543116 Tan04g0814 Tan-Chr4:6926194 9.80E-108 dispersed
Tan04g0068 Tan-Chr4:543116 Tan11g1832 Tan-Chr11:21409204 4.70E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67413 PF00069 Pkinase 3.70E-32 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0068 - - - 0.0