Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0075 ATGGATGTTCCCGAAGTTGAAGAAATACTTTTTGCTCCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAACTCGCTGCAATTTATTGCCAAGTTATGTTAATTTTCCCTTCCTTGGAAGCAGCTCGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCATTGCATGTAGCTCTTGAGAAGGCCAAGAATACTCTTCGACATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTCTCACAATCAATTGGATTTCAGATTCAGCCGATAGTAAACGAACTCAAGGACACCGTTTTCTTACTTGACCCACTCGAGAAACAAGTTGGTGACGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCCATAATGAGCTGGAGCATTTTCATCAGGCCGCCACAAAACTGGGAATTACATCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCCCTTAAGAGACTTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGTCGGATGACACTGACTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACTTACAGCCAACAGTCGAGTCTTTGAACAGCAGCTTTCAAAGCTCAATTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTGAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGCATAGAGAAGTGGTTCAGTGACGGTCACAAAACCTGCCCAAAAACTCAACATAGGCTCTCCCATCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTGATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCCTGATGATCCACCAAAGTCTCTTGATCTGAATTATTGGAGACTTGCATTGTCCGATTCCGAGTCTGGAAAATCAAGATCTGTGGACACTGTTGGCTCTTGCATGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGCAGCTATTAAGGTTCCTGAAGAAAATGAAGCTGATGATAATGCATATATGGAGGAATCATCTGATTTTATTACACTGGAGAGCTGTATAAATTTTATGGCAGTATTGACTGAAGAGGGAGACATGAGAAAAAAATGTAAGGTTGTGGAGCAAATAAGACTTTTACTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGGTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCAGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCGACAGCCCTATATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCTATCATTAGTTCGAGTAGAGCCGTGCCTTTCCTGATCCAGCTGCTTACTTGCAATGGTGAATCACAAACCAAGCTCGATGCACTTCATACCCTTTATAACCTCTCGACCACTCCCTCCATCGTCCCTGTTCTTCTTTCCTCTGGCATCATTGATGGACTTCAATCCTTTCTCGCAACTCCGGGTGACAACATGTGGACAGAGACTTCCTTAGCTGTCTTAATAAACTTAGCTTCAAGCCAGTTGGGGATAGAAGAAATAATTTCGGCCCCGGAGCTTATCAGTGGGTTGGCAGCCATTGTGGATGCTGGCGAATGCGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGATTTTGTGTAGGGGGAGTGAAAAATGCAGTCAAATGGTTTTGCAGGAAGGAGTGATTCCTGGACTGGTGGCGATTACGGTAAATGGGACTTCGAGAGGGAAAATAAAAGCTCAGAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCGGCCAGCAGCGAGATGGAAATAGCGACGCAACCATGGCTGCTCCAGAGACAAAGCCACTATGCAAATCAGTATCAAAGAAAAAGATGGGGAAAGCATTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTATACCAATGTTGA 2304 42.84 MDVPEVEEILFAPGDAKLHGEMYKKLAAIYCQVMLIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQPIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELSDDTDSQGGSTPCSPTVRCSLEDNGLTANSRVFEQQLSKLNSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQHRLSHLSLTPNYSVKGLIANWCEHNGVPIPDDPPKSLDLNYWRLALSDSESGKSRSVDTVGSCMLKEVKVVPLEESAAIKVPEENEADDNAYMEESSDFITLESCINFMAVLTEEGDMRKKCKVVEQIRLLLKDDDEARILMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSRAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSIVPVLLSSGIIDGLQSFLATPGDNMWTETSLAVLINLASSQLGIEEIISAPELISGLAAIVDAGECAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKIKAQKLLMLFREQRQKDTDIGQQRDGNSDATMAAPETKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 570901 576634 + Tan0005986.2 Tan04g0075 748479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0075 767 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Tan04g0075 767 SUPERFAMILY ARM repeat 434 697 IPR016024 -
Tan04g0075 767 Gene3D - 535 710 IPR011989 -
Tan04g0075 767 Gene3D - 420 533 IPR011989 -
Tan04g0075 767 SUPERFAMILY RING/U-box 274 356 - -
Tan04g0075 767 PANTHER U BOX DOMAIN-CONTAINING 23 714 - -
Tan04g0075 767 CDD RING-Ubox_PUB 281 333 IPR045210 -
Tan04g0075 767 SMART arm_5 506 544 IPR000225 GO:0005515(InterPro)
Tan04g0075 767 SMART arm_5 460 504 IPR000225 GO:0005515(InterPro)
Tan04g0075 767 SMART arm_5 545 586 IPR000225 GO:0005515(InterPro)
Tan04g0075 767 Pfam U-box domain 281 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0075 767 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0075 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Tan04g0075 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2190 Tan-Chr2:91126656 Tan04g0075 Tan-Chr4:570901 9.00E-232 dispersed
Tan04g0075 Tan-Chr4:570901 Tan04g0077 Tan-Chr4:570901 4.90E-246 dispersed
Tan04g0074 Tan-Chr4:570901 Tan04g0075 Tan-Chr4:570901 0.00E+00 tandem
Tan04g0075 Tan-Chr4:570901 Tan04g0076 Tan-Chr4:570901 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0075 - - - 0.0