Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0077 ATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGTCGGATGACACTGACTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACTTACAGCCAACAGTCGAGTCTTTGAACAGCAGCTTTCAAAGCTCAATTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTGAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGCATAGAGAAGTGGTTCAGTGACGGTCACAAAACCTGCCCAAAAACTCAACATAGGCTCTCCCATCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTGATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCCTGATGATCCACCAAAGTCTCTTGATCTGAATTATTGGAGACTTGCATTGTCCGATTCCGAGTCTGGAAAATCAAGATCTGTGGACACTGTTGGCTCTTGCATGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGCAGCTATTAAGGTTCCTGAAGAAAATGAAGCTGATGATAATGCATATATGGAGGAATCATCTGATTTTATTACACTGGAGAGCTGTATAAATTTTATGGCAGTATTGACTGAAGAGGGAGACATGAGAAAAAAATGTAAGGTTGTGGAGCAAATAAGACTTTTACTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGGTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCAGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCGACAGCCCTATATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCTATCATTAGTTCGAGTAGAGCCGTGCCTTTCCTGATCCAGCTGCTTACTTGCAATGGTGAATCACAAACCAAGCTCGATGCACTTCATACCCTTTATAACCTCTCGACCACTCCCTCCATCGTCCCTGTTCTTCTTTCCTCTGGCATCATTGATGGACTTCAATCCTTTCTCGCAACTCCGGGTGACAACATGTGGACAGAGACTTCCTTAGCTGTCTTAATAAACTTAGCTTCAAGCCAGTTGGGGATAGAAGAAATAATTTCGGCCCCGGAGCTTATCAGTGGGTTGGCAGCCATTGTGGATGCTGGCGAATGCGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGATTTTGTGTAGGGGGAGTGAAAAATGCAGTCAAATGGTTTTGCAGGAAGGAGTGATTCCTGGACTGGTGGCGATTACGGTAAATGGGACTTCGAGAGGGAAAATAAAAGCTCAGAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCGGCCAGCAGCGAGATGGAAATAGCGACGCAACCATGGCTGCTCCAGAGACAAAGCCACTATGCAAATCAGTATCAAAGAAAAAGATGGGGAAAGCATTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTATACCAATGTTGA 1674 43.31 MRKYSKLFRSELSDDTDSQGGSTPCSPTVRCSLEDNGLTANSRVFEQQLSKLNSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQHRLSHLSLTPNYSVKGLIANWCEHNGVPIPDDPPKSLDLNYWRLALSDSESGKSRSVDTVGSCMLKEVKVVPLEESAAIKVPEENEADDNAYMEESSDFITLESCINFMAVLTEEGDMRKKCKVVEQIRLLLKDDDEARILMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSRAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSIVPVLLSSGIIDGLQSFLATPGDNMWTETSLAVLINLASSQLGIEEIISAPELISGLAAIVDAGECAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKIKAQKLLMLFREQRQKDTDIGQQRDGNSDATMAAPETKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 570901 576634 + Tan0005986.4 Tan04g0077 748481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0077 557 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0077 557 MobiDBLite consensus disorder prediction 1 26 - -
Tan04g0077 557 Gene3D - 209 322 IPR011989 -
Tan04g0077 557 Pfam U-box domain 71 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0077 557 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0077 557 PANTHER U BOX DOMAIN-CONTAINING 42 504 - -
Tan04g0077 557 SUPERFAMILY RING/U-box 64 146 - -
Tan04g0077 557 SUPERFAMILY ARM repeat 224 487 IPR016024 -
Tan04g0077 557 CDD RING-Ubox_PUB 71 123 IPR045210 -
Tan04g0077 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Tan04g0077 557 FunFam RING-type E3 ubiquitin transferase 69 143 - -
Tan04g0077 557 Gene3D - 325 499 IPR011989 -
Tan04g0077 557 SMART arm_5 250 294 IPR000225 GO:0005515(InterPro)
Tan04g0077 557 SMART arm_5 335 376 IPR000225 GO:0005515(InterPro)
Tan04g0077 557 SMART arm_5 296 334 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0075 Tan-Chr4:570901 Tan04g0077 Tan-Chr4:570901 4.90E-246 dispersed
Tan04g0077 Tan-Chr4:570901 Tan04g0628 Tan-Chr4:5304952 2.30E-27 dispersed
Tan04g0076 Tan-Chr4:570901 Tan04g0077 Tan-Chr4:570901 4.90E-246 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0077 - - - 0.0