Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0094 ATGGAAGAAGAGATCGGAGAAGAGTTCAAGAGGAGTGGTTTCACGTTCGATGAAGAGGAAGAGATTCTCAAGAAATGTGTTACGTTATGTGTTAATTACAATCTAAAGCCTTCGGATATAGTTTCTAGTTGGGAAGTCTACTATCTAAACAGGCAATTAGATGGGTCAATGGTATTAATTGCACAGATGGATGGGTTCTTACAACATTTACAGAATGAGCAAAAAGAAGCAGTCATTAAAGGGGAAACAGATCTTCATGTTTACTCGAGCAAAGATGTGGACATGATTTTGAATGACGAGGATGAAGATCCAAATGAAGACATTCTTAAAACTCCAAATGGGAAATCTCAGAGCCTCCACAAGGATCAATTTGATATGACACCTTACACAAATCAAGGCTTGTTCTCGTCGGGAAAACCTTCGAAGCATGTGACACCCTTCGGCCAAAGAACAGAAAAATTTGTTGTGAGGTTCAGCATTAATAGCATGCCTGATAAGGAGACTGCTGAAAAGGAAGATAATTGCGAGAATGATGAGGATGCAATCATCAAGAAGGTTCGACCCCTGCAAGGATGCTCCTTGACAGTCCATGGATCAGGATTTGGACTTGAACCAAATTGCAGGTTCATGTATGACAGGGTTGAAGATAGGTTTAATGCTCTTGAAAACCGAATCATGAAGCATGCTAAAGCTCTTGCTGCTACTGGGCACTACGAAGGAGCAGTGGACCCTACAGTTGCTTCGCAGAAAAGCATGTTTGCAGTAGGCATGATTTGTTGTGATGGTGAAGGACACTTGAACGATAAGTCCACCTTGTTGCAGAGCAGTGTCGAGCATTCAGGGGGGCAGCGAGTTCGTCTAGAATTACAAAACTTAAGTCAGTTTTCAATCTTTCCTGGCCAGGTTGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGCTTGATTGCATCCAAACTTGTTGATTCTTTTCCTTTGTCTGCCACTACTGACCCCATTCTGCCTCCAGCAAAGAAGATTGCTTTGAACCATGATATCCAGCCAATTAATCAACCTTCTACACAGTCAGAATTATCAATGATTATTGCATCAGGCCCCTATACAACGACAGACAATTTATTGTTTGAGCCTTTGACAGAGTTACTAGCATATGCAAAAAGAAAGCCTCCTCAGCTACTAATTTTGCTTGGGCCATTTGTTGATTCAGAACATTCTGATATCAAGAGAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAACTTTGAAGTTCTCAGAAGGGTGCAAGATTATGCAGAACACATGGGTCCTGATGCACGTGTACTTTTGATGCCATCTATAAGGGATGCCAATCACGACTTTGTTTTTCCTCAGCCTGCTTTTGACATTCCATCTGATCTTAGACTTCAGATATCCAGTCTCCCAAACCCAGGCATTTTGGAAGCAAATCAGGCAAAGATAGCCTGCTGCACCATGGATATTCTCAGACACCTTAGTGGTGAAGAGCTGTCAAGAAATCTAACAAAGGGAACAGCCAACGACCGCTTGAGCACACTTGCAAGTCATATCCTCCGGCAGCGCAGCTTTTATCCTCTATACCCTCCAGCCGAAGGAGTTCCACTGGACTTTTCACTTGCCCCAAAAGCTCTTGACATCTCTGTAGTACCCGACATTCTCATTCTTCCATCCGACATGAAGCACTTCGTGAAGGTTATATCCCTTGGTGAGGGAGGTTCGGACGAAGAACGAGCGAGTTGCGTGTGTGTGAATCCCGGAAGATTGGCCAAGGGTGAAGGAGGGGGTACTTTTGTAGAGCTTAATTACTTTGGTAGACCTGACCAGATAAACGCTGCAGTTGTCAGCATATGA 1869 43.29 MEEEIGEEFKRSGFTFDEEEEILKKCVTLCVNYNLKPSDIVSSWEVYYLNRQLDGSMVLIAQMDGFLQHLQNEQKEAVIKGETDLHVYSSKDVDMILNDEDEDPNEDILKTPNGKSQSLHKDQFDMTPYTNQGLFSSGKPSKHVTPFGQRTEKFVVRFSINSMPDKETAEKEDNCENDEDAIIKKVRPLQGCSLTVHGSGFGLEPNCRFMYDRVEDRFNALENRIMKHAKALAATGHYEGAVDPTVASQKSMFAVGMICCDGEGHLNDKSTLLQSSVEHSGGQRVRLELQNLSQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSATTDPILPPAKKIALNHDIQPINQPSTQSELSMIIASGPYTTTDNLLFEPLTELLAYAKRKPPQLLILLGPFVDSEHSDIKRGTVEMSFEEIFNFEVLRRVQDYAEHMGPDARVLLMPSIRDANHDFVFPQPAFDIPSDLRLQISSLPNPGILEANQAKIACCTMDILRHLSGEELSRNLTKGTANDRLSTLASHILRQRSFYPLYPPAEGVPLDFSLAPKALDISVVPDILILPSDMKHFVKVISLGEGGSDEERASCVCVNPGRLAKGEGGGTFVELNYFGRPDQINAAVVSI 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 665347 671091 - Tan0005839.1 Tan04g0094 748498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0094 622 Gene3D - 1 76 IPR043034 -
Tan04g0094 622 FunFam DNA polymerase alpha subunit B 1 74 - -
Tan04g0094 622 Pfam DNA polymerase alpha/epsilon subunit B 361 570 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Tan04g0094 622 Pfam DNA polymerase alpha subunit B, OB domain 221 321 IPR054300 -
Tan04g0094 622 Coils Coil 211 231 - -
Tan04g0094 622 FunFam DNA polymerase alpha subunit B 341 505 - -
Tan04g0094 622 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 2 608 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
Tan04g0094 622 Pfam DNA polymerase alpha subunit B N-terminal 3 50 IPR013627 -
Tan04g0094 622 Gene3D - 339 511 - -
Tan04g0094 622 Gene3D - 512 618 - -
Tan04g0094 622 PIRSF DNA_pol_alpha_2 1 614 IPR016722 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0094 Tan-Chr4:665347 Tan04g0095 Tan-Chr4:665347 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0094 K02321 - csv:101206268 1137.87