Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0107 ATGGGGTTTCCTCGTTTTTTGGTTTTGATTCTTCTCGTCGTTTCTTCTGTCGATTGTCAGGTTAAAGAGTTCGTCAGTATAGACTGTGGTGGCGCGAAGAACTACACCGACCCAGTTACAGGTTTGACATGGATTTCCGATGCCGGAATTATGGCCGCCGGTGGCTCATCGCCGGTGGAAAACCCAAATGGGAACTTGATGCAGTACCAAACACGGCGGGATTTCCCCATCGACGACAAGAAGTACTGTTACACTTTGAAAACAGAGGAGAGAAGAAGGTATCTGGTTCGTGCAACTTTTCAGTATGGGAGTTTGAAGAATGAAGAGACATACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCGACTGTTACGATTTTTGATGCTTCGAGAGTTTATGTGAAGGAGATGATTATCAGGGCACCTTCAAATTCGTTTGATGTGTGTATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACTGATTTTGAAGATGATTTCTTCTTGGAAGTAGCTGCTAGAGTGAATTTTGGTGCTCTGACAAAGGATGTGATTAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGATCTTGAGAAGAGGCAAAATTATCTTGTGGGGGTGGCTCCTGGGACAGAAAGAATCAGTACTTTGAACAACATTAATGTAATGACAAGAGAATATCCTCCTGTTAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTCAGCTACAGGTTGAATTTGGATGACTTTCCTGCCAATGCCAGGGCTTATGCATATTTTGCTGAAATTGAAGATTTGGGTTGGAATGAGACTCGGAAGTTCAAATTGGAGGAACCGAACATTCCAGACTCGAGCAATGCAGTGGTGAATATTGCTGAGAATGCCAACGGGACCTATACTCTTTATGAGCCAAGTTATATGAATGTCACTCTGAGTTTCGTGCTTTCGTTCTCCTTTGTCAAGACTAGAGATTCGACTCGAGGGCCACTTTTGAATGCTTTGGAAATTAGCAGATATGTTGAGATTGCTGCCAAGACTGATAGACGAGATGAGACTGTTGTGAATGCCTTCCGTATCACGTCAGCGGAGAGTGTTTGGACAAATCAAGGCGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTACTGCCACGAAACCGCCGAGAATAACTAAAATTGACCTTTCCGAAAAGGATGTCAAAGGTGAAATTCCTCCCGAGATCAATACTATGGACGGATTAACGGAATTGTGGTTAGATGGTAATTCCCTTGCAGGACCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTACCTTCTTACCTGGGTACTTTGCCCAACTTACAGGAACTATATATTCAAAACAATACTTTTTCGGGTGAGATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACCTGGGGCTGCACAAAAGTAAACGATACAATATGCATTCTAAGCTTATTATAGGAGTTTCATTGGGAGTGCTTGTGCTTCTGATCCTTCTACTTGTAGGAAGTTTGCTTTTACTCCACAAGCTTCGAAGAAGGACGACGCCTTATCAGAAAAAAGGTGGTTCTCTGCAAGCCAGCACCAAGCGCTCTTCTGGCTACTCGATCGGCAAGGGGGATGAAGGCATTGCCTATTATTTATCTCTCTCCGAGCTGGAAGAGGCAACCAATAACTTTTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTATTATGGGAAGATGACAGATGGAAAAGAAGTGGCAGTTAAAATCATGGCTGAGTCATCCGCACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGTGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCATAATGGAACATTACGAGATCACTTATATGGTTGTACCAATCAGAAGCACTTGGACTGGCTGCCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTGAAAACAAGCAACATACTCCTCGACATCAATATGAGAGCCAAAGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACAGTAGGCTACTTGGATCCTGAGTACTATGCTAGTCAACAACTGACCGAAAAGAGCGACGTATATAGTTTTGGGGTGGTTCTACTAGAGCTAATCTCCGGGAAGAAACCTGTCTCACCAGAAGACTATGGCAGTGAATTGAACATTGTTCACTGGGCGAGGTCACTAGTCCATAAAGGGGATGTGACGAGCATCGTCGATCCATTTCTAGAAGGAAAAGTCAAAATAGAATCCGTGTGGAGAATTGCTGAAGTTGCCATACAGTGCGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAGTCAAGATTGAACAAGGTACTGAAGGAAACCAGAAACTATCTTCAGGCAGTTCAAGAGCACAATCATCTCGGAAAACATTGCTAACGACGTTTCTCGAAATCGAGAGCCCCGACGGTTCCCTCCTTCCCTCGGCAAGATAA 2766 43.75 MGFPRFLVLILLVVSSVDCQVKEFVSIDCGGAKNYTDPVTGLTWISDAGIMAAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDDFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDETVVNAFRITSAESVWTNQGDPCVPTSWEWVTCTATKPPRITKIDLSEKDVKGEIPPEINTMDGLTELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGTLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNLGLHKSKRYNMHSKLIIGVSLGVLVLLILLLVGSLLLLHKLRRRTTPYQKKGGSLQASTKRSSGYSIGKGDEGIAYYLSLSELEEATNNFSKKIGKGSFGSVYYGKMTDGKEVAVKIMAESSAHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGCTNQKHLDWLPRLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGSELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAVKIEQGTEGNQKLSSGSSRAQSSRKTLLTTFLEIESPDGSLLPSAR 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 744925 750743 + Tan0013626.1 Tan04g0107 748511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0107 921 ProSiteProfiles Protein kinase domain profile. 602 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0107 921 Pfam Malectin-like domain 27 359 IPR024788 -
Tan04g0107 921 CDD STKc_IRAK 608 869 - -
Tan04g0107 921 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524(InterPro)
Tan04g0107 921 Pfam Leucine Rich repeats (2 copies) 459 495 IPR025875 -
Tan04g0107 921 SUPERFAMILY L domain-like 395 502 - -
Tan04g0107 921 FunFam Leucine-rich repeat receptor-like protein kinase 574 677 - -
Tan04g0107 921 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 678 885 - -
Tan04g0107 921 Gene3D Transferase(Phosphotransferase) domain 1 678 896 - -
Tan04g0107 921 SUPERFAMILY Protein kinase-like (PK-like) 589 870 IPR011009 -
Tan04g0107 921 PANTHER OS07G0107800 PROTEIN-RELATED 454 880 - -
Tan04g0107 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0107 921 Gene3D Ribonuclease Inhibitor 374 515 IPR032675 -
Tan04g0107 921 Gene3D Phosphorylase Kinase; domain 1 580 677 - -
Tan04g0107 921 SMART serkin_6 602 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0107 921 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 407 504 - -
Tan04g0107 921 Pfam Protein tyrosine and serine/threonine kinase 604 869 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4498 Tan-Chr1:110607714 Tan04g0107 Tan-Chr4:744925 2.90E-67 dispersed
Tan04g0107 Tan-Chr4:744925 Tan04g0109 Tan-Chr4:744925 0.00E+00 dispersed
Tan10g1763 Tan-Chr10:50378493 Tan04g0107 Tan-Chr4:744925 1.20E-63 dispersed
Tan04g0107 Tan-Chr4:744925 Tan04g0108 Tan-Chr4:744925 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67416 PF12819 Malectin_like 5.00E-87 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0107 - - - 0.0