Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0108 ATGGCCGCCGGTGGCTCATCGCCGGTGGAAAACCCAAATGGGAACTTGATGCAGTACCAAACACGGCGGGATTTCCCCATCGACGACAAGAAGTACTGTTACACTTTGAAAACAGAGGAGAGAAGAAGGTATCTGGTTCGTGCAACTTTTCAGTATGGGAGTTTGAAGAATGAAGAGACATACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCGACTGTTACGATTTTTGATGCTTCGAGAGTTTATGTGAAGGAGATGATTATCAGGGCACCTTCAAATTCGTTTGATGTGTGTATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACTGATTTTGAAGATGATTTCTTCTTGGAAGTAGCTGCTAGAGTGAATTTTGGTGCTCTGACAAAGGATGTGATTAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGATCTTGAGAAGAGGCAAAATTATCTTGTGGGGGTGGCTCCTGGGACAGAAAGAATCAGTACTTTGAACAACATTAATGTAATGACAAGAGAATATCCTCCTGTTAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTCAGCTACAGGTTGAATTTGGATGACTTTCCTGCCAATGCCAGGGCTTATGCATATTTTGCTGAAATTGAAGATTTGGGTTGGAATGAGACTCGGAAGTTCAAATTGGAGGAACCGAACATTCCAGACTCGAGCAATGCAGTGGTGAATATTGCTGAGAATGCCAACGGGACCTATACTCTTTATGAGCCAAGTTATATGAATGTCACTCTGAGTTTCGTGCTTTCGTTCTCCTTTGTCAAGACTAGAGATTCGACTCGAGGGCCACTTTTGAATGCTTTGGAAATTAGCAGATATGTTGAGATTGCTGCCAAGACTGATAGACGAGATGAGACTGTTGTGAATGCCTTCCGTATCACGTCAGCGGAGAGTGTTTGGACAAATCAAGGCGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTACTGCCACGAAACCGCCGAGAATAACTAAAATTGACCTTTCCGAAAAGGATGTCAAAGGTGAAATTCCTCCCGAGATCAATACTATGGACGGATTAACGGAATTGTGGTTAGATGGTAATTCCCTTGCAGGACCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTACCTTCTTACCTGGGTACTTTGCCCAACTTACAGGAACTATATATTCAAAACAATACTTTTTCGGGTGAGATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACCTGGGGCTGCACAAAAGTAAACGATACAATATGCATTCTAAGCTTATTATAGGAGTTTCATTGGGAGTGCTTGTGCTTCTGATCCTTCTACTTGTAGGAAGTTTGCTTTTACTCCACAAGCTTCGAAGAAGGACGACGCCTTATCAGAAAAAAGGTGGTTCTCTGCAAGCCAGCACCAAGCGCTCTTCTGGCTACTCGATCGGCAAGGGGGATGAAGGCATTGCCTATTATTTATCTCTCTCCGAGCTGGAAGAGGCAACCAATAACTTTTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTATTATGGGAAGATGACAGATGGAAAAGAAGTGGCAGTTAAAATCATGGCTGAGTCATCCGCACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGTGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCATAATGGAACATTACGAGATCACTTATATGGTTGTACCAATCAGAAGCACTTGGACTGGCTGCCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTGAAAACAAGCAACATACTCCTCGACATCAATATGAGAGCCAAAGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACAGTAGGCTACTTGGATCCTGAGTACTATGCTAGTCAACAACTGACCGAAAAGAGCGACGTATATAGTTTTGGGGTGGTTCTACTAGAGCTAATCTCCGGGAAGAAACCTGTCTCACCAGAAGACTATGGCAGTGAATTGAACATTGTTCACTGGGCGAGGTCACTAGTCCATAAAGGGGATGTGACGAGCATCGTCGATCCATTTCTAGAAGGAAAAGTCAAAATAGAATCCGTGTGGAGAATTGCTGAAGTTGCCATACAGTGCGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAGTCAAGATTGAACAAGGTACTGAAGGAAACCAGAAACTATCTTCAGGCAGTTCAAGAGCACAATCATCTCGGAAAACATTGCTAACGACGTTTCTCGAAATCGAGAGCCCCGACGGTTCCCTCCTTCCCTCGGCAAGATAA 2616 43.65 MAAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDDFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDETVVNAFRITSAESVWTNQGDPCVPTSWEWVTCTATKPPRITKIDLSEKDVKGEIPPEINTMDGLTELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGTLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNLGLHKSKRYNMHSKLIIGVSLGVLVLLILLLVGSLLLLHKLRRRTTPYQKKGGSLQASTKRSSGYSIGKGDEGIAYYLSLSELEEATNNFSKKIGKGSFGSVYYGKMTDGKEVAVKIMAESSAHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGCTNQKHLDWLPRLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGSELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAVKIEQGTEGNQKLSSGSSRAQSSRKTLLTTFLEIESPDGSLLPSAR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 744925 750743 + Tan0013626.2 Tan04g0108 748512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0108 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 673 685 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0108 871 ProSiteProfiles Protein kinase domain profile. 552 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0108 871 Pfam Leucine Rich repeats (2 copies) 409 445 IPR025875 -
Tan04g0108 871 Gene3D Phosphorylase Kinase; domain 1 530 627 - -
Tan04g0108 871 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 628 835 - -
Tan04g0108 871 Gene3D Transferase(Phosphotransferase) domain 1 628 846 - -
Tan04g0108 871 SUPERFAMILY L domain-like 345 452 - -
Tan04g0108 871 Pfam Protein tyrosine and serine/threonine kinase 554 819 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0108 871 PANTHER OS07G0107800 PROTEIN-RELATED 404 830 - -
Tan04g0108 871 CDD STKc_IRAK 558 819 - -
Tan04g0108 871 Pfam Malectin-like domain 13 309 IPR024788 -
Tan04g0108 871 SUPERFAMILY Protein kinase-like (PK-like) 539 820 IPR011009 -
Tan04g0108 871 SMART serkin_6 552 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0108 871 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 357 454 - -
Tan04g0108 871 FunFam Leucine-rich repeat receptor-like protein kinase 523 627 - -
Tan04g0108 871 ProSitePatterns Protein kinases ATP-binding region signature. 558 580 IPR017441 GO:0005524(InterPro)
Tan04g0108 871 Gene3D Ribonuclease Inhibitor 324 465 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0108 Tan-Chr4:744925 Tan04g0110 Tan-Chr4:744925 0.00E+00 dispersed
Tan04g0107 Tan-Chr4:744925 Tan04g0108 Tan-Chr4:744925 0.00E+00 tandem
Tan04g0108 Tan-Chr4:744925 Tan04g0109 Tan-Chr4:744925 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67417 PF12819 Malectin_like 2.30E-76 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0108 - - - 0.0