Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0109 ATGGGGTTTCCTCGTTTTTTGGTTTTGATTCTTCTCGTCGTTTCTTCTGTCGATTGTCAGGTTAAAGAGTTCGTCAGTATAGACTGTGGTGGCGCGAAGAACTACACCGACCCAGTTACAGGTTTGACATGGATTTCCGATGCCGGAATTATGGCCGCCGGTGGCTCATCGCCGGTGGAAAACCCAAATGGGAACTTGATGCAGTACCAAACACGGCGGGATTTCCCCATCGACGACAAGAAGTACTGTTACACTTTGAAAACAGAGGAGAGAAGAAGGTATCTGGTTCGTGCAACTTTTCAGTATGGGAGTTTGAAGAATGAAGAGACATACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCGACTGTTACGATTTTTGATGCTTCGAGAGTTTATGTGAAGGAGATGATTATCAGGGCACCTTCAAATTCGTTTGATGTGTGTATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACTGATTTTGAAGATGATTTCTTCTTGGAAGTAGCTGCTAGAGTGAATTTTGGTGCTCTGACAAAGGATGTGATTAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGATCTTGAGAAGAGGCAAAATTATCTTGTGGGGGTGGCTCCTGGGACAGAAAGAATCAGTACTTTGAACAACATTAATGTAATGACAAGAGAATATCCTCCTGTTAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTCAGCTACAGGTTGAATTTGGATGACTTTCCTGCCAATGCCAGGGCTTATGCATATTTTGCTGAAATTGAAGATTTGGGTTGGAATGAGACTCGGAAGTTCAAATTGGAGGAACCGAACATTCCAGACTCGAGCAATGCAGTGGTGAATATTGCTGAGAATGCCAACGGGACCTATACTCTTTATGAGCCAAGTTATATGAATGTCACTCTGAGTTTCGTGCTTTCGTTCTCCTTTGTCAAGACTAGAGATTCGACTCGAGGGCCACTTTTGAATGCTTTGGAAATTAGCAGATATGTTGAGATTGCTGCCAAGACTGATAGACGAGATGAGACTGTTGTGAATGCCTTCCGTATCACGTCAGCGGAGAGTGTTTGGACAAATCAAGGCGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTACTGCCACGAAACCGCCGAGAATAACTAAAATTGACCTTTCCGAAAAGGATGTCAAAGGTGAAATTCCTCCCGAGATCAATACTATGGACGGATTAACGGAATTGTGGTTAGATGGTAATTCCCTTGCAGGACCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTACCTTCTTACCTGGGTACTTTGCCCAACTTACAGGAACTATATATTCAAAACAATACTTTTTCGGGTGAGATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACCTGGGGCTGCACAAAAGTAAACGATACAATATGCATTCTAAGCTTATTATAGGAGTTTCATTGGGAGTGCTTGTGCTTCTGATCCTTCTACTTGTAGGAAGTTTGCTTTTACTCCACAAGCTTCGAAGAAGGACGACGCCTTATCAGAAAAAAGGTGGTTCTCTGCAAGCCAGCACCAAGCGCTCTTCTGGCTACTCGATCGGCAAGGGGGATGAAGGCATTGCCTATTATTTATCTCTCTCCGAGCTGGAAGAGGCAACCAATAACTTTTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTATTATGGGAAGATGACAGATGGAAAAGAAGTGGCAGTTAAAATCATGGCTGAGTCATCCGCACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGTGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCATAATGGAACATTACGAGATCACTTATATGGTCTGCTCTTCTATCCAGGCTCAAGAAAAGTTTATTTTCCCGTCTTTCTTTGCTAA 2121 42.34 MGFPRFLVLILLVVSSVDCQVKEFVSIDCGGAKNYTDPVTGLTWISDAGIMAAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDDFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDETVVNAFRITSAESVWTNQGDPCVPTSWEWVTCTATKPPRITKIDLSEKDVKGEIPPEINTMDGLTELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGTLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNLGLHKSKRYNMHSKLIIGVSLGVLVLLILLLVGSLLLLHKLRRRTTPYQKKGGSLQASTKRSSGYSIGKGDEGIAYYLSLSELEEATNNFSKKIGKGSFGSVYYGKMTDGKEVAVKIMAESSAHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGLLFYPGSRKVYFPVFLC 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 744925 750743 + Tan0013626.3 Tan04g0109 748513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0109 706 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 407 505 - -
Tan04g0109 706 Gene3D Phosphorylase Kinase; domain 1 577 677 - -
Tan04g0109 706 Pfam Leucine Rich repeats (2 copies) 459 495 IPR025875 -
Tan04g0109 706 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524(InterPro)
Tan04g0109 706 SUPERFAMILY L domain-like 395 502 - -
Tan04g0109 706 Pfam Malectin-like domain 27 359 IPR024788 -
Tan04g0109 706 SUPERFAMILY Protein kinase-like (PK-like) 587 691 IPR011009 -
Tan04g0109 706 PANTHER OS07G0107800 PROTEIN-RELATED 19 469 - -
Tan04g0109 706 ProSiteProfiles Protein kinase domain profile. 602 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0109 706 Gene3D Ribonuclease Inhibitor 374 515 IPR032675 -
Tan04g0109 706 Pfam Protein tyrosine and serine/threonine kinase 604 687 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0109 706 FunFam Leucine-rich repeat receptor-like protein kinase 573 677 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0107 Tan-Chr4:744925 Tan04g0109 Tan-Chr4:744925 0.00E+00 dispersed
Tan04g0109 Tan-Chr4:744925 Tan08g1927 Tan-Chr8:71517396 2.70E-182 dispersed
Tan04g0108 Tan-Chr4:744925 Tan04g0109 Tan-Chr4:744925 0.00E+00 tandem
Tan04g0109 Tan-Chr4:744925 Tan04g0110 Tan-Chr4:744925 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67418 PF12819 Malectin_like 2.70E-87 CL0202 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0109 - - - 0.0