Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0134 ATGAGGGTCCGATCATGGCTACTTCCCTGCTCAACCGCCGCCGCCGCGGAACCCAATAAACCGCCTCAATCCTCCTCCTTCTTAATTTCCGACGCTAGCAGCTTTTCCGACGCGTCGGCCAACTCTTCGTCGTCATCGTCGTCGACACCTAGTTCCGACACTAGCTGGTCCAGTCTCCAAAGCAATCTCTCTCTTCAATCCCTACCGTCGATTCCATCTCTTCAAAAACTCCCCACCGCCACCGATGCCTTAAACGTCGCCGTTTCTCAACTCCACGTCGCCGCCTCCAAGCTCCCAATCTCCCATCTCGCCGTCCACGGGCCTCACCTCTACGTGGCTACCGCTCACGAAATCAACGTCTACGATCGAACCACCTTTTCCTACGTGGCTTCCTTCAACGCTCGAGATTCCTCCTCCGGCTCCGTCAAGGGAATCGCCTTTCTCAACGGCGAAATCCTCACTTCTCACCAAGACGGCAAAATCCGCGTCTGGAATTTAACGGACAAACATTTCAAATTGGTCAACACTCTCCCTACAGTCAACGACCGCCTTCGACGATTCATACTCCCGAAGAATTACGTCAACGTCCGCCGTCACAAGAAGGTCCTCTGGATTCAACACGCCGACGCCGTCACCGGACTTGCCGTCAACGGCAATTCGTTTTACTCTGTTTCATGGGATCGGAGTTTGAAAGTCTGGCGAGGCTCCAATCACCGGTGCGTCGAGTCCGTGAAGGCGGCGCACGAGGATGCCGTCAACGCAGTGGCCGTCTCCGCCGCGGGGACTGTGTACACCGGATCAGCCGATCGGAGAATCCGTGTCTGGTCGAAACCGGCGACGGAAAAACGGCATGTTCTGGTAGCGACGTTAGAGAAGCACAAATCGGCGGTGAATGCATTGGCGTTAAACGATGACGGTTCGTTGCTTTTCTCCGGGGCCTGCGATCGGTCCGTCCTGGTGTGGGAAAGAGAGGACAGCGCGAACCACATGGCGGTGATCGGAGCATTACGGGGTCACAAAAATGCCATTCTTTGTTTGATCTACGTCTCAGATTTGCTGTTGAGTGGGTCCGCAGATCGGACGGTCAGGGTTTGGCAACGTGGAGGAGATGGCAGTTTTAATTGCTTGTCAGTACTGGAGGGTCATCAGAAACCGGTGAAATCGCTGGCGGTGGTGTCCGACGGGTTATCGAACGGCGTCGTATCGGTGTGTAGTGGGAGCCTTGATGGGGAACTAAAAGCGTGGAAACTCTCGTTTTCGAATCTTAACAGTCCATTGCCAAATTCAAATATTATGAAGTGGAGCTAA 1308 54.36 MRVRSWLLPCSTAAAAEPNKPPQSSSFLISDASSFSDASANSSSSSSSTPSSDTSWSSLQSNLSLQSLPSIPSLQKLPTATDALNVAVSQLHVAASKLPISHLAVHGPHLYVATAHEINVYDRTTFSYVASFNARDSSSGSVKGIAFLNGEILTSHQDGKIRVWNLTDKHFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNGNSFYSVSWDRSLKVWRGSNHRCVESVKAAHEDAVNAVAVSAAGTVYTGSADRRIRVWSKPATEKRHVLVATLEKHKSAVNALALNDDGSLLFSGACDRSVLVWEREDSANHMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWQRGGDGSFNCLSVLEGHQKPVKSLAVVSDGLSNGVVSVCSGSLDGELKAWKLSFSNLNSPLPNSNIMKWS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 875071 876796 + Tan0000503.1 Tan04g0134 748538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0134 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
Tan04g0134 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 366 - -
Tan04g0134 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 366 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 SUPERFAMILY WD40 repeat-like 97 418 IPR036322 GO:0005515(InterPro)
Tan04g0134 435 Gene3D - 193 281 IPR015943 GO:0005515(InterPro)
Tan04g0134 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 331 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 Gene3D - 73 192 IPR015943 GO:0005515(InterPro)
Tan04g0134 435 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Tan04g0134 435 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Tan04g0134 435 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Tan04g0134 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 276 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 Pfam WD domain, G-beta repeat 246 276 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 Pfam WD domain, G-beta repeat 333 365 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 Pfam WD domain, G-beta repeat 374 415 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 Pfam WD domain, G-beta repeat 206 233 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 Gene3D - 282 429 IPR015943 GO:0005515(InterPro)
Tan04g0134 435 SMART WD40_4 372 416 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 SMART WD40_4 198 234 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 SMART WD40_4 237 276 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 SMART WD40_4 329 366 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 SMART WD40_4 125 165 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 SMART WD40_4 283 322 IPR001680 GO:0005515(InterPro)
Tan04g0134 435 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 34 418 IPR045182 -
Tan04g0134 435 FunFam BnaA09g28200D protein 194 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0134 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0134 Tan-Chr4:875071 Tan09g2327 Tan-Chr9:73067047 1.60E-65 dispersed
Tan04g0134 Tan-Chr4:875071 Tan02g1913 Tan-Chr2:87571960 8.60E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49