Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0179 | ATGGGGAAGTCACTCAAATGTTCACTATTTTTGGCTTACGTTATACTGCTACTCGTTGCAAGTTGCTCGGTTTTAGGAGGAAATGAGCCTAATCGGCTGTCGTTGCTAGCTTTTAAAGCGGAAGTAACTCGTGATCCTCACCGGATTCTTGACTCCTGGAATGATTCTCTACACTTTTGTCAATGGTGGGGTGTCACGTGTGGAAAAAAGCATCGGAGTGTCACTAGATTAGAGCTCCAATCGCTTCAATTATCTGGTAGGTTAACGCCCCACATCGGGAACTTGAGTTTTCTCAAGGTGTTGGATCTTGGAATCAATAGCTTCAGTGGTCATATCCCTCTAGAAGTTGGTCGCTTGTTTCGGCTCCAAGTTCTAGTTCTCCAATCCAACTCTTTCAGTGGCGAAATACCAAGAAATATATCAGGTTGTTCCAATCTCTTACGTCTTAATTTAGGTTCCAACACCCTGGTTGGTAAACTTCCAACTGAACTTGGTTTGTTATCCAAGCTTATGATTCTTGCTTTGCAAAACAATAGTCTGGTGGGGGAAATTTTACCTTCTCTTGGAAATCTTTCTTATCTTGAAGTATTCACAATTACAATCAATAATTTTCAGGGCAGCATCCCCGAATCCGTTGGACAGTTGAAAAGATTAAAGACTCTTTACCTTGGTGCAAACAAGCTGAGTGGTCAGGTCCCTCATTCCCTCTACAATCTCTCCTCGCTTAGAAACCTTTCTTTTCCAGTAAACCAGCTTCAAGGGAGTCTTCCTCCAAACTTAGGACATCAACTTCCAAACATCGAGATGTTGAGACTCCATACGAACAAATTACATGGGCCAATTCCAATCTCCATCTCCAATGCCTCAAAGATCTCGGTTATTTCAATTTCCAACAATCATTTTTCTGGGGAAGTGCCTATCCTAGCAAACCTACATTCTTTCCAAGTAGTTGACTTATCTAATAATGGTTTTACAAACGATGACTTGAGTTTTCTCTACCCATTAGTTAACTGCACCAATTTAGAAGGTTTGCATATGAGTGACAACAACTTTGGAGGAATCTTGCCAGACTACATAAGCAACTTCTCTACAAAGCTTGAAAAAGTGACAATAGCAAGGAATCACATACGAGGAAAAATTCCCAGGGAGATTGGAAATCTTATCAACTTGAATGCCTTAGGAATGGAGACAAACCAATTAACTGGTCCAATACCAATATCAATAGGTAAATTGCACAAACTTGGTTCTCTATTTCTTAATGGAAATAAACTTGCAGGTGCTATACCACCTTCTATAGGCAATTTAACCACGTTGATGAGATTAAATCTAAGGTTAAATAATTTGGAGGGAAGTATACCACCAAGTATTGGGCAATGCCAACAATTGCTGGAGATGTCTCTTTCTAATAATTATCTTAATGGTTCCATACCAAAAGAGATTTTTGTTACATCGTTGTTTGCTTTTGATTGGTCTGAAAATCTTTTGATTGGTTCCATTCCCATGGAAGTGGGCAAGTTGGTCAACCTTAATTATATGAATATTTCAAATAACAGGTTATCTGGAGAACTTCCAAGAAGTTTAGGTAGTTGCATACGCTTAGAGACTCTAGCCTTAAGTGGCAACATGATTCAAGGAACCATTCCCCAGACTTGGAGCTCCTTGAGAGGAATTCAGACTCTCGACCTATCTCAAAATAACTTGTCTGGCAAAATTTCAGAATATTTTGGGAGTTTCCAGGTTTTGGAGTACTTGAATCTTTCATTCAACAATTTTGACGGTGAGTTACCTATGCAAGGAGTCTTTAAGAATGCAAGTAAATTTTCGATCACTGGGAACTATAGACTTTGTGGTGGAATACCTGAACTAAAGCTATCCAGATGCAAATCTAACGAGCCCAGGAAGTTGTATTTGTCTCGTAAGCTAAAATTATTCATTATACTTGCTGGTGCATTTGTTAGTCTAATCTTGATGTTGGCTTTCATTGCTCTATTTTGGTTGAGGAAAAAAAGAAGCACGCCTACACTAAGCTCATCTCAACCTTCTGGTTTGCAACTGTCATATTACGATCTCTTCAAAGCAACCAATGGATTTTCCCCTTCTAATCTGATCGGAAAAGGTGGCTTTGGTTCAGTGTATAAAGGAATTCTCAGTCAAGATGAGATGGTCATTGCAGTGAAAGTGTTCAACCTTCAATACAGAGGATCTTTCAAGAGTTTCATGGCTGAATGTGAAGCCTTGAGAAATATTAGGCATCGAAATCTTGTGAGGTCACTAACTGCGTGTTCAAGTATTGATTCCCAAGGTAATGACTTCATGGCATTGGTCTATGAGTTCATGTCGAATGGGAGCTTGGAAGATTGGTTGTATCCTGCTGATGGAAGTGATCAGGGTTTGGATCTAATGCAGAGGTTAAATATTGCTATAGAAGTGGCCAGCGCTTTAGAGTATTTGCATAACCAATGCCACATGAAAATAGTTCATTGTGACCTAAAACCAAGCAATATTCTTCTTGATGATGACATGACTGCCCATATTGGGGATTTTGGATTAGCGAGGTTTATTCATGAAGCTTCTGAGCATTTCTCTTTGGAGCAGACAAGCTCAATTGGATTAAAAGGTTCTATAGGCTATACCGCCCCAGAATATGGGATGGGTGGTGAAGTGTCGACTCATGGTGATATGTATAGCTACGGCATCTTGCTATTGGAGATGTTCACAGGGAAGAAACCAACTGATGACATGTTCAGAGACGGGTTAGACTTGCACAAATATGCATTGAGGGGATTGTCGGAAGGAATACCAAACGTTGCAGATTCAGCAATTCTACAGATGGAAGAGGAAACAGGCAACAATGACACTCAACATATCAACAGGTTTTTAGTCTCCATTATTAAACTAGGACTTGAATGTTCTGTAAGGAAACCCAAAGAGAGAAAAGATTGTGGCCAAATTCTAGTTGAATTATCTTCAATCAAGAGGATTTTCCTTGAAAATTAA | 2997 | 39.54 | MGKSLKCSLFLAYVILLLVASCSVLGGNEPNRLSLLAFKAEVTRDPHRILDSWNDSLHFCQWWGVTCGKKHRSVTRLELQSLQLSGRLTPHIGNLSFLKVLDLGINSFSGHIPLEVGRLFRLQVLVLQSNSFSGEIPRNISGCSNLLRLNLGSNTLVGKLPTELGLLSKLMILALQNNSLVGEILPSLGNLSYLEVFTITINNFQGSIPESVGQLKRLKTLYLGANKLSGQVPHSLYNLSSLRNLSFPVNQLQGSLPPNLGHQLPNIEMLRLHTNKLHGPIPISISNASKISVISISNNHFSGEVPILANLHSFQVVDLSNNGFTNDDLSFLYPLVNCTNLEGLHMSDNNFGGILPDYISNFSTKLEKVTIARNHIRGKIPREIGNLINLNALGMETNQLTGPIPISIGKLHKLGSLFLNGNKLAGAIPPSIGNLTTLMRLNLRLNNLEGSIPPSIGQCQQLLEMSLSNNYLNGSIPKEIFVTSLFAFDWSENLLIGSIPMEVGKLVNLNYMNISNNRLSGELPRSLGSCIRLETLALSGNMIQGTIPQTWSSLRGIQTLDLSQNNLSGKISEYFGSFQVLEYLNLSFNNFDGELPMQGVFKNASKFSITGNYRLCGGIPELKLSRCKSNEPRKLYLSRKLKLFIILAGAFVSLILMLAFIALFWLRKKRSTPTLSSSQPSGLQLSYYDLFKATNGFSPSNLIGKGGFGSVYKGILSQDEMVIAVKVFNLQYRGSFKSFMAECEALRNIRHRNLVRSLTACSSIDSQGNDFMALVYEFMSNGSLEDWLYPADGSDQGLDLMQRLNIAIEVASALEYLHNQCHMKIVHCDLKPSNILLDDDMTAHIGDFGLARFIHEASEHFSLEQTSSIGLKGSIGYTAPEYGMGGEVSTHGDMYSYGILLLEMFTGKKPTDDMFRDGLDLHKYALRGLSEGIPNVADSAILQMEEETGNNDTQHINRFLVSIIKLGLECSVRKPKERKDCGQILVELSSIKRIFLEN | 998 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1440157 | 1444306 | + | Tan0019900.1 | Tan04g0179 | 748583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0179 | 998 | Pfam | Protein kinase domain | 700 | 915 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan04g0179 | 998 | Pfam | Leucine Rich Repeat | 121 | 143 | IPR001611 | GO:0005515(InterPro) | |
Tan04g0179 | 998 | Pfam | Leucine Rich Repeat | 508 | 530 | IPR001611 | GO:0005515(InterPro) | |
Tan04g0179 | 998 | Pfam | Leucine Rich Repeat | 438 | 459 | IPR001611 | GO:0005515(InterPro) | |
Tan04g0179 | 998 | Pfam | Leucine Rich Repeat | 340 | 362 | IPR001611 | GO:0005515(InterPro) | |
Tan04g0179 | 998 | Pfam | Leucine Rich Repeat | 217 | 239 | IPR001611 | GO:0005515(InterPro) | |
Tan04g0179 | 998 | SUPERFAMILY | L domain-like | 31 | 326 | - | - | |
Tan04g0179 | 998 | Gene3D | Phosphorylase Kinase; domain 1 | 679 | 778 | - | - | |
Tan04g0179 | 998 | SUPERFAMILY | L domain-like | 334 | 617 | - | - | |
Tan04g0179 | 998 | Pfam | Leucine rich repeat N-terminal domain | 32 | 67 | IPR013210 | - | |
Tan04g0179 | 998 | ProSitePatterns | Protein kinases ATP-binding region signature. | 703 | 726 | IPR017441 | GO:0005524(InterPro) | |
Tan04g0179 | 998 | FunFam | LRR receptor-like serine/threonine-protein kinase EFR | 668 | 778 | - | - | |
Tan04g0179 | 998 | FunFam | Leucine-rich repeat receptor-like protein kinase | 28 | 185 | - | - | |
Tan04g0179 | 998 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 779 | 998 | - | - | |
Tan04g0179 | 998 | SMART | LRR_sd22_2 | 215 | 241 | - | - | |
Tan04g0179 | 998 | SMART | LRR_sd22_2 | 411 | 437 | - | - | |
Tan04g0179 | 998 | SMART | LRR_sd22_2 | 554 | 586 | - | - | |
Tan04g0179 | 998 | Gene3D | Ribonuclease Inhibitor | 28 | 308 | IPR032675 | - | |
Tan04g0179 | 998 | Gene3D | Ribonuclease Inhibitor | 309 | 635 | IPR032675 | - | |
Tan04g0179 | 998 | SMART | serkin_6 | 697 | 996 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan04g0179 | 998 | CDD | STKc_IRAK | 703 | 991 | - | - | |
Tan04g0179 | 998 | SUPERFAMILY | Protein kinase-like (PK-like) | 671 | 988 | IPR011009 | - | |
Tan04g0179 | 998 | Pfam | Leucine rich repeat | 532 | 591 | IPR001611 | GO:0005515(InterPro) | |
Tan04g0179 | 998 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 825 | 837 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan04g0179 | 998 | FunFam | LRR receptor-like serine/threonine-protein kinase EFR | 326 | 633 | - | - | |
Tan04g0179 | 998 | Gene3D | Transferase(Phosphotransferase) domain 1 | 779 | 995 | - | - | |
Tan04g0179 | 998 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | - | - | |
Tan04g0179 | 998 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 186 | 278 | - | - | |
Tan04g0179 | 998 | SMART | LRR_typ_2 | 119 | 143 | IPR003591 | - | |
Tan04g0179 | 998 | SMART | LRR_typ_2 | 554 | 577 | IPR003591 | - | |
Tan04g0179 | 998 | SMART | LRR_typ_2 | 578 | 603 | IPR003591 | - | |
Tan04g0179 | 998 | SMART | LRR_typ_2 | 506 | 530 | IPR003591 | - | |
Tan04g0179 | 998 | SMART | LRR_typ_2 | 411 | 434 | IPR003591 | - | |
Tan04g0179 | 998 | SMART | LRR_typ_2 | 435 | 459 | IPR003591 | - | |
Tan04g0179 | 998 | SMART | LRR_typ_2 | 215 | 239 | IPR003591 | - | |
Tan04g0179 | 998 | PANTHER | OS04G0122200 PROTEIN | 45 | 991 | IPR051809 | - | |
Tan04g0179 | 998 | ProSiteProfiles | Protein kinase domain profile. | 697 | 996 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g1770 | Tan-Chr2:82168475 | Tan04g0179 | Tan-Chr4:1440157 | 2.40E-06 | dispersed | |
Tan04g0179 | Tan-Chr4:1440157 | Tan11g0275 | Tan-Chr11:2161536 | 1.30E-134 | dispersed | |
Tan04g0179 | Tan-Chr4:1440157 | Tan11g0274 | Tan-Chr11:2152098 | 4.90E-121 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67421 | PF00069 | Pkinase | 7.80E-43 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0179 | - | - | - | 0.0 |