Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0179 ATGGGGAAGTCACTCAAATGTTCACTATTTTTGGCTTACGTTATACTGCTACTCGTTGCAAGTTGCTCGGTTTTAGGAGGAAATGAGCCTAATCGGCTGTCGTTGCTAGCTTTTAAAGCGGAAGTAACTCGTGATCCTCACCGGATTCTTGACTCCTGGAATGATTCTCTACACTTTTGTCAATGGTGGGGTGTCACGTGTGGAAAAAAGCATCGGAGTGTCACTAGATTAGAGCTCCAATCGCTTCAATTATCTGGTAGGTTAACGCCCCACATCGGGAACTTGAGTTTTCTCAAGGTGTTGGATCTTGGAATCAATAGCTTCAGTGGTCATATCCCTCTAGAAGTTGGTCGCTTGTTTCGGCTCCAAGTTCTAGTTCTCCAATCCAACTCTTTCAGTGGCGAAATACCAAGAAATATATCAGGTTGTTCCAATCTCTTACGTCTTAATTTAGGTTCCAACACCCTGGTTGGTAAACTTCCAACTGAACTTGGTTTGTTATCCAAGCTTATGATTCTTGCTTTGCAAAACAATAGTCTGGTGGGGGAAATTTTACCTTCTCTTGGAAATCTTTCTTATCTTGAAGTATTCACAATTACAATCAATAATTTTCAGGGCAGCATCCCCGAATCCGTTGGACAGTTGAAAAGATTAAAGACTCTTTACCTTGGTGCAAACAAGCTGAGTGGTCAGGTCCCTCATTCCCTCTACAATCTCTCCTCGCTTAGAAACCTTTCTTTTCCAGTAAACCAGCTTCAAGGGAGTCTTCCTCCAAACTTAGGACATCAACTTCCAAACATCGAGATGTTGAGACTCCATACGAACAAATTACATGGGCCAATTCCAATCTCCATCTCCAATGCCTCAAAGATCTCGGTTATTTCAATTTCCAACAATCATTTTTCTGGGGAAGTGCCTATCCTAGCAAACCTACATTCTTTCCAAGTAGTTGACTTATCTAATAATGGTTTTACAAACGATGACTTGAGTTTTCTCTACCCATTAGTTAACTGCACCAATTTAGAAGGTTTGCATATGAGTGACAACAACTTTGGAGGAATCTTGCCAGACTACATAAGCAACTTCTCTACAAAGCTTGAAAAAGTGACAATAGCAAGGAATCACATACGAGGAAAAATTCCCAGGGAGATTGGAAATCTTATCAACTTGAATGCCTTAGGAATGGAGACAAACCAATTAACTGGTCCAATACCAATATCAATAGGTAAATTGCACAAACTTGGTTCTCTATTTCTTAATGGAAATAAACTTGCAGGTGCTATACCACCTTCTATAGGCAATTTAACCACGTTGATGAGATTAAATCTAAGGTTAAATAATTTGGAGGGAAGTATACCACCAAGTATTGGGCAATGCCAACAATTGCTGGAGATGTCTCTTTCTAATAATTATCTTAATGGTTCCATACCAAAAGAGATTTTTGTTACATCGTTGTTTGCTTTTGATTGGTCTGAAAATCTTTTGATTGGTTCCATTCCCATGGAAGTGGGCAAGTTGGTCAACCTTAATTATATGAATATTTCAAATAACAGGTTATCTGGAGAACTTCCAAGAAGTTTAGGTAGTTGCATACGCTTAGAGACTCTAGCCTTAAGTGGCAACATGATTCAAGGAACCATTCCCCAGACTTGGAGCTCCTTGAGAGGAATTCAGACTCTCGACCTATCTCAAAATAACTTGTCTGGCAAAATTTCAGAATATTTTGGGAGTTTCCAGGTTTTGGAGTACTTGAATCTTTCATTCAACAATTTTGACGGTGAGTTACCTATGCAAGGAGTCTTTAAGAATGCAAGTAAATTTTCGATCACTGGGAACTATAGACTTTGTGGTGGAATACCTGAACTAAAGCTATCCAGATGCAAATCTAACGAGCCCAGGAAGTTGTATTTGTCTCGTAAGCTAAAATTATTCATTATACTTGCTGGTGCATTTGTTAGTCTAATCTTGATGTTGGCTTTCATTGCTCTATTTTGGTTGAGGAAAAAAAGAAGCACGCCTACACTAAGCTCATCTCAACCTTCTGGTTTGCAACTGTCATATTACGATCTCTTCAAAGCAACCAATGGATTTTCCCCTTCTAATCTGATCGGAAAAGGTGGCTTTGGTTCAGTGTATAAAGGAATTCTCAGTCAAGATGAGATGGTCATTGCAGTGAAAGTGTTCAACCTTCAATACAGAGGATCTTTCAAGAGTTTCATGGCTGAATGTGAAGCCTTGAGAAATATTAGGCATCGAAATCTTGTGAGGTCACTAACTGCGTGTTCAAGTATTGATTCCCAAGGTAATGACTTCATGGCATTGGTCTATGAGTTCATGTCGAATGGGAGCTTGGAAGATTGGTTGTATCCTGCTGATGGAAGTGATCAGGGTTTGGATCTAATGCAGAGGTTAAATATTGCTATAGAAGTGGCCAGCGCTTTAGAGTATTTGCATAACCAATGCCACATGAAAATAGTTCATTGTGACCTAAAACCAAGCAATATTCTTCTTGATGATGACATGACTGCCCATATTGGGGATTTTGGATTAGCGAGGTTTATTCATGAAGCTTCTGAGCATTTCTCTTTGGAGCAGACAAGCTCAATTGGATTAAAAGGTTCTATAGGCTATACCGCCCCAGAATATGGGATGGGTGGTGAAGTGTCGACTCATGGTGATATGTATAGCTACGGCATCTTGCTATTGGAGATGTTCACAGGGAAGAAACCAACTGATGACATGTTCAGAGACGGGTTAGACTTGCACAAATATGCATTGAGGGGATTGTCGGAAGGAATACCAAACGTTGCAGATTCAGCAATTCTACAGATGGAAGAGGAAACAGGCAACAATGACACTCAACATATCAACAGGTTTTTAGTCTCCATTATTAAACTAGGACTTGAATGTTCTGTAAGGAAACCCAAAGAGAGAAAAGATTGTGGCCAAATTCTAGTTGAATTATCTTCAATCAAGAGGATTTTCCTTGAAAATTAA 2997 39.54 MGKSLKCSLFLAYVILLLVASCSVLGGNEPNRLSLLAFKAEVTRDPHRILDSWNDSLHFCQWWGVTCGKKHRSVTRLELQSLQLSGRLTPHIGNLSFLKVLDLGINSFSGHIPLEVGRLFRLQVLVLQSNSFSGEIPRNISGCSNLLRLNLGSNTLVGKLPTELGLLSKLMILALQNNSLVGEILPSLGNLSYLEVFTITINNFQGSIPESVGQLKRLKTLYLGANKLSGQVPHSLYNLSSLRNLSFPVNQLQGSLPPNLGHQLPNIEMLRLHTNKLHGPIPISISNASKISVISISNNHFSGEVPILANLHSFQVVDLSNNGFTNDDLSFLYPLVNCTNLEGLHMSDNNFGGILPDYISNFSTKLEKVTIARNHIRGKIPREIGNLINLNALGMETNQLTGPIPISIGKLHKLGSLFLNGNKLAGAIPPSIGNLTTLMRLNLRLNNLEGSIPPSIGQCQQLLEMSLSNNYLNGSIPKEIFVTSLFAFDWSENLLIGSIPMEVGKLVNLNYMNISNNRLSGELPRSLGSCIRLETLALSGNMIQGTIPQTWSSLRGIQTLDLSQNNLSGKISEYFGSFQVLEYLNLSFNNFDGELPMQGVFKNASKFSITGNYRLCGGIPELKLSRCKSNEPRKLYLSRKLKLFIILAGAFVSLILMLAFIALFWLRKKRSTPTLSSSQPSGLQLSYYDLFKATNGFSPSNLIGKGGFGSVYKGILSQDEMVIAVKVFNLQYRGSFKSFMAECEALRNIRHRNLVRSLTACSSIDSQGNDFMALVYEFMSNGSLEDWLYPADGSDQGLDLMQRLNIAIEVASALEYLHNQCHMKIVHCDLKPSNILLDDDMTAHIGDFGLARFIHEASEHFSLEQTSSIGLKGSIGYTAPEYGMGGEVSTHGDMYSYGILLLEMFTGKKPTDDMFRDGLDLHKYALRGLSEGIPNVADSAILQMEEETGNNDTQHINRFLVSIIKLGLECSVRKPKERKDCGQILVELSSIKRIFLEN 998
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1440157 1444306 + Tan0019900.1 Tan04g0179 748583
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0179 998 Pfam Protein kinase domain 700 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0179 998 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Tan04g0179 998 Pfam Leucine Rich Repeat 508 530 IPR001611 GO:0005515(InterPro)
Tan04g0179 998 Pfam Leucine Rich Repeat 438 459 IPR001611 GO:0005515(InterPro)
Tan04g0179 998 Pfam Leucine Rich Repeat 340 362 IPR001611 GO:0005515(InterPro)
Tan04g0179 998 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515(InterPro)
Tan04g0179 998 SUPERFAMILY L domain-like 31 326 - -
Tan04g0179 998 Gene3D Phosphorylase Kinase; domain 1 679 778 - -
Tan04g0179 998 SUPERFAMILY L domain-like 334 617 - -
Tan04g0179 998 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Tan04g0179 998 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524(InterPro)
Tan04g0179 998 FunFam LRR receptor-like serine/threonine-protein kinase EFR 668 778 - -
Tan04g0179 998 FunFam Leucine-rich repeat receptor-like protein kinase 28 185 - -
Tan04g0179 998 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 779 998 - -
Tan04g0179 998 SMART LRR_sd22_2 215 241 - -
Tan04g0179 998 SMART LRR_sd22_2 411 437 - -
Tan04g0179 998 SMART LRR_sd22_2 554 586 - -
Tan04g0179 998 Gene3D Ribonuclease Inhibitor 28 308 IPR032675 -
Tan04g0179 998 Gene3D Ribonuclease Inhibitor 309 635 IPR032675 -
Tan04g0179 998 SMART serkin_6 697 996 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0179 998 CDD STKc_IRAK 703 991 - -
Tan04g0179 998 SUPERFAMILY Protein kinase-like (PK-like) 671 988 IPR011009 -
Tan04g0179 998 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515(InterPro)
Tan04g0179 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0179 998 FunFam LRR receptor-like serine/threonine-protein kinase EFR 326 633 - -
Tan04g0179 998 Gene3D Transferase(Phosphotransferase) domain 1 779 995 - -
Tan04g0179 998 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Tan04g0179 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 278 - -
Tan04g0179 998 SMART LRR_typ_2 119 143 IPR003591 -
Tan04g0179 998 SMART LRR_typ_2 554 577 IPR003591 -
Tan04g0179 998 SMART LRR_typ_2 578 603 IPR003591 -
Tan04g0179 998 SMART LRR_typ_2 506 530 IPR003591 -
Tan04g0179 998 SMART LRR_typ_2 411 434 IPR003591 -
Tan04g0179 998 SMART LRR_typ_2 435 459 IPR003591 -
Tan04g0179 998 SMART LRR_typ_2 215 239 IPR003591 -
Tan04g0179 998 PANTHER OS04G0122200 PROTEIN 45 991 IPR051809 -
Tan04g0179 998 ProSiteProfiles Protein kinase domain profile. 697 996 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1770 Tan-Chr2:82168475 Tan04g0179 Tan-Chr4:1440157 2.40E-06 dispersed
Tan04g0179 Tan-Chr4:1440157 Tan11g0275 Tan-Chr11:2161536 1.30E-134 dispersed
Tan04g0179 Tan-Chr4:1440157 Tan11g0274 Tan-Chr11:2152098 4.90E-121 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67421 PF00069 Pkinase 7.80E-43 CL0016 Tan PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0179 - - - 0.0