Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0181 ATGGCCTCCATATATCGTGATCGGACGTCGGAGTTCCGGTCACTCTCGGAGACGCTGAAGAAGATCGGCGGAGTCACAGCCGCCGTCAATCCAGCTCAAAATGAACCATCGGCGTCGGTACCTTCCGGATCACCGACCTTTACACGATCGGAATTCAGCAAGAAGGCCTCGCGTATCGGATTGGGAATCCAAGAAACGTCTCAGAAGATCGCGAGGCTCGCTCAGTTGGCAAAAAGATCATCAATGTTTGATGATCCAATCAGGGAAATACAGGAAATGACTACTTTGGTTAAGAATGATATCACATCATTGAATGTAGCTATCTCAGACTTGCAAACCATCCAAAATATGGAGACAACAGAGGGGAATTATTCAGAGGATAGAGTGGTTCATTCAACCGCTGTCTGTGATGACCTGAAGAGCAAACTTATGGGAGCTACAAAACAACTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGGCAAATATTTTCTGCAAATGCAACCAGAGAAAATCCTTTTCAAAATCAAGCTAAAACCGTAACTCAACCGCCACCATGGTCAAGTAATACATCTGGAAGTGCCCAATCGTCCTTGCTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTGAGACGAAGGTTAGCTGTGGAGAACACTCCTTCCCAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCTCTCCATAATGTGGAATCCACCATTTCAGAACTTAGTGGAATTTTTACACATCTTGCGACAATGGTAGCACATCAAGGTGAACTTGCTATCAGGATTGATGACAACATGGATGAATCATTGGCAAATGTAGAAGGTGCTCGAAGTGCTCTTTTGAGGCATCTTAGCCAGATATCATCAAATAGATGGCTTCTTATCAAAATATTTGTCATTTTAATAATTTTCTTGATGATCTTTATTTTCTTGGCATAA 1011 43.22 MASIYRDRTSEFRSLSETLKKIGGVTAAVNPAQNEPSASVPSGSPTFTRSEFSKKASRIGLGIQETSQKIARLAQLAKRSSMFDDPIREIQEMTTLVKNDITSLNVAISDLQTIQNMETTEGNYSEDRVVHSTAVCDDLKSKLMGATKQLQDVLTTRTENIKANESRRQIFSANATRENPFQNQAKTVTQPPPWSSNTSGSAQSSLLSSNGAQVGGQLRRRLAVENTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSALLRHLSQISSNRWLLIKIFVILIIFLMIFIFLA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1471316 1475131 - Tan0016778.1 Tan04g0181 748585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0181 336 PANTHER SYNTAXIN 55 327 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan04g0181 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Tan04g0181 336 MobiDBLite consensus disorder prediction 173 211 - -
Tan04g0181 336 CDD SNARE_syntaxin5 248 322 - -
Tan04g0181 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Tan04g0181 336 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan04g0181 336 SUPERFAMILY t-snare proteins 49 300 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan04g0181 336 MobiDBLite consensus disorder prediction 30 49 - -
Tan04g0181 336 Gene3D - 48 300 - -
Tan04g0181 336 SMART tSNARE_6 240 307 IPR000727 -
Tan04g0181 336 Pfam SNARE domain 282 333 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2666 Tan-Chr2:94990584 Tan04g0181 Tan-Chr4:1471316 2.60E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0181 K08490 - csv:101213786 547.74