Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0184 ATGGAGGGAAAGGAAGAAGACGTTCGATTGGGGGCTAACAAGTTCAATGAGAGGCAGCCCATTGGGACGGCGGCACAGAGCCAAGATGACGGCAAGGACTACAAGGAGCCACCGCCGGCGCCGTTGTTCGAGCCGGAGGAGCTCACTTCATGGTCCTTTTACAGAGCCGGAATTGCCGAGTTTTTCGCCACTTTTCTCTTCCTCTACATCACCGTTTTGACCGTCATGGGCGTCTTCCGCTCCAAGGATGCCACCGGCAACACCTGCAAGACCGTCGGAATTCAGGGCATTGCTTGGGCTTTCGGCGGAATGATTTTTGCTCTCGTTTACTGTACTGCTGGGATCTCCGGCGGTCACATTAACCCGGCGGTGACTTTTGGCCTGTTTCTGGCCAGGAAGCTGTCGTTGACCAGAGCCATTTTCTACATCGTGATGCAGTGTTTAGGCGCCATCTGCGGCGCCGGCGTTGTGAAGGGCTTCCAACCCAAGCCCTACGACAGGCTCGGCGGCGGAGCTAACGAAGTGAGCAAGGGCTACACCAAAGGAGACGGCCTCGGCGCCGAGATCGTCGGTACCTTTATTCTTGTTTACACCGTCTTCTCCGCCACCGACGCTAAACGTAGCGCCAGAGACTCCCATGTTCCAATTTTGGCGCCTCTACCAATTGGGTTCGCAGTGTTCTTAGTTCACTTAGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCCCGGAGTTTGGGCGCCGCCATCATCTACAACAACGAGAAAGCCTGGGATGACCACTGGATTTTCTGGGTTGGACCGTTCATCGGAGCAGCATTGGCAGCTTTATACCACCAAGTGGTGATCAGAGCCATTCCCTTTAAGTCCAAGTGA 879 55.52 MEGKEEDVRLGANKFNERQPIGTAAQSQDDGKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVFRSKDATGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYDRLGGGANEVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1492177 1493465 + Tan0020541.1 Tan04g0184 748588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0184 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 CDD MIP 55 283 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Tan04g0184 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Tan04g0184 292 MobiDBLite consensus disorder prediction 1 39 - -
Tan04g0184 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Tan04g0184 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 NCBIfam MIP family channel protein 59 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0184 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Tan04g0184 292 FunFam Probable aquaporin PIP1-2 40 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0184 Tan-Chr4:1492177 Tan07g1628 Tan-Chr7:67736079 1.20E-139 dispersed
Tan04g0184 Tan-Chr4:1492177 Tan04g0185 Tan-Chr4:1499137 3.10E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0184 K09872 - csv:101215145 565.844