Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0265 ATGGCAAATCGATGGTGGGCTGAAAATATACCCACCACCACAGATAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCCGCCGATGAAGAGAACAACTCCGGCAGCCATGAGAGAGCTGAACCAAGCACCAGCTCCAGCACGCGCCGCCCACGTGGCCGTCCGCCGGGATCCAAAAACAAGCCTAAGCCGCCGGTGGTGGTCACCAAGGAGAGCCCCGATGCCCTCCGGAGCCACGTTTTGGAGATCAGCAGCGGCAGCGACATCGTTGAAAGCATCTCAAACTTCGCCCAACGCCGCCAGCGAGGAGTTTCAGTCCTCAGTGGAAATGGGGTTGTCGCCAATGTCACTCTTCGGCATCCAGCTGCCCCCAGCGGCGTTATTACACTACAGGGTCGATTCGATATATTGTCTCTCTCTGGTGCTTTCTTGCCTGCCCCAGCTCCACCAGGGGCTACCGGGTTAACAGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTTGGTGGCATTGTCGTTGGTGCACTCGTTGCAACCGGTCCGGTCATCGTCATCGCTGCCACTTTCACCAATGCTACATTCGAGCGGCTGCCACTCGAGGACGAGGAGGCAGCTGCCGGAGACAAGTCTGGAAATAGCCAAAACAATTCTTCTCAGAGCATGGGGGAGCCACAGCAGCAGCAACAGCAGTCTTCAATGGGAGTTTACAATATGGCTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCTCATGATGTGTTTTGGAGCCCTCCTCGAGCCCCTCCTCCATATTAA 807 55.64 MANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEENNSGSHERAEPSTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEISSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPSGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEAAAGDKSGNSQNNSSQSMGEPQQQQQQSSMGVYNMASNLVPNGQVSSHDVFWSPPRAPPPY 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2102119 2104431 + Tan0000926.1 Tan04g0265 748669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0265 268 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Tan04g0265 268 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Tan04g0265 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Tan04g0265 268 CDD DUF296 82 165 IPR005175 -
Tan04g0265 268 MobiDBLite consensus disorder prediction 206 268 - -
Tan04g0265 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Tan04g0265 268 MobiDBLite consensus disorder prediction 1 78 - -
Tan04g0265 268 MobiDBLite consensus disorder prediction 43 58 - -
Tan04g0265 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 267 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan04g0265 268 PIRSF ESCAROLA 7 266 IPR014476 GO:0003680(InterPro)
Tan04g0265 268 Gene3D - 81 210 - -
Tan04g0265 268 MobiDBLite consensus disorder prediction 1 35 - -
Tan04g0265 268 MobiDBLite consensus disorder prediction 212 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0265 Tan-Chr4:2102119 Tan10g0717 Tan-Chr10:5902568 1.20E-63 dispersed
Tan04g0265 Tan-Chr4:2102119 Tan04g0266 Tan-Chr4:2102119 2.50E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0265 - - - 0.0