Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0267 ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCATCTTCTTGTGGTGCCTGCAAGTTTCTTAGGCGAAAATGTAGTAATCAATGTGTTTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGCAATGTCTCCAAGCTTCTCTTACACCTCCCCATGAACATCCGAAGCCATGCTGCGATTACCGTTGCTTACGAAGCTCTCGAGCGCATGAGAGATCCCACGTATGGTTGTGTCGCCCATATCTTCGCATTGCAGCAAGAGGTCGCGAACTTGCAAGAAGAGATAGAAATTCTAGGGAGCCAAATAGCCAACTTTACCGCCGGTGACGGTGGCGTTGCGGCGGTCGAGTCGCAGCAGCTGAAGCTGAATGATTTGGTGATGAACTCAAACGAGCTGCTTTCTCAATTGCCCCACCAAACTTGTGATCAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTAGTTTAGGGGAAGAAGAAGGGTTTTTTGGGTGCAACCCAAATATTAATGTTGTGGAGAGATCAGCATTTGATGTTTCAGTTGAGGAGAATTTTGCTTGTTATCCATGCTAG 615 44.88 MTGLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAGDGGVAAVESQQLKLNDLVMNSNELLSQLPHQTCDQVQINDAQMISPLFSLGEEEGFFGCNPNINVVERSAFDVSVEENFACYPC 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2119646 2120990 - Tan0001488.1 Tan04g0267 748671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0267 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 147 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Tan04g0267 204 Coils Coil 93 113 - -
Tan04g0267 204 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Tan04g0267 204 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0267 Tan-Chr4:2119646 Tan06g1134 Tan-Chr6:11283057 1.50E-37 dispersed
Tan04g0267 Tan-Chr4:2119646 Tan06g2154 Tan-Chr6:71327896 2.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27149 PF03195 LOB 3.20E-33 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0267 K13945 - csv:101204875 279.256