Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0284 ATGGTTGCCATTTCGATTTCTATTCTCGCCATTGTTCTCTCGGTGCTCGCCGTCGACGCTAGGATTCCTGGAGTTTACTCCGGCGGCCAGTGGCAGACCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTGTACAGCCAAGGCTATGGCGTGAACACCGCGGCGTTGAGCACTGCTCTGTTCAACAGCGGTTTAAGCTGCGGAGCATGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATTCCGGCAGTCCGTCAATTTTCATTACCGCCACAAACTTTTGTCCTCCGAATTACGCTCTCCCGAACGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTAAAGATCGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCCTATCGCAGGGTGCCATGCCGGAAACAGGGAGGAATCAGGTTCACAATCAATGGCTTCCGATACTTCAACTTGGTACTGATCACAAACGTGGCAGGGGCAGGTGACATAGTTAAGGCGAGTGTGAAAGGAAGCAAAACAGAGTGGATGAGCATGAGCAGAAACTGGGGTCAAAACTGGCAATCAAATGCCATTTTAGTTGGTCAGTCACTGTCGTTCAGAGTCACAGCCAGTGACCGTCGCACCACCACTTCCTGGAACATCGTCCCCTCCAACTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTAG 774 53.36 MVAISISILAIVLSVLAVDARIPGVYSGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTASDRRTTTSWNIVPSNWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2328711 2330783 + Tan0012749.1 Tan04g0284 748688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0284 257 PANTHER EXPANSIN-A15 7 255 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Tan04g0284 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Tan04g0284 257 FunFam Expansin 20 159 - -
Tan04g0284 257 SMART dpbb_1 66 153 IPR007112 -
Tan04g0284 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Tan04g0284 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Tan04g0284 257 Gene3D - 19 159 IPR036908 -
Tan04g0284 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Tan04g0284 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Tan04g0284 257 FunFam Expansin 163 255 - -
Tan04g0284 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Tan04g0284 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Tan04g0284 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Tan04g0284 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Tan04g0284 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Tan04g0284 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Tan04g0284 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Tan04g0284 257 CDD DPBB_EXPA_N 30 158 - -
Tan04g0284 257 Gene3D - 163 255 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0284 Tan-Chr4:2328711 Tan05g0412 Tan-Chr5:2890306 2.20E-134 dispersed
Tan01g2437 Tan-Chr1:30691827 Tan04g0284 Tan-Chr4:2328711 4.30E-130 wgd
Tan03g0945 Tan-Chr3:65909605 Tan04g0284 Tan-Chr4:2328711 7.60E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0284 - - - 0.0