Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0301 ATGGCAGATTCTGAGGATATTCAGCCTCTCGTATGCGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCCTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACCTTGAAATACCCAATTGAGCATGGTATTGTTAGTAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCACCCAGTTCTCCTAACTGAGGCTCCTCTGAACCCAAAGGCTAATCGTGAGAAGATGACACAAATTATGTTTGAAACCTTCAATACTCCAGCAATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCTCTCCCACATGCCATCCTTCGTCTTGACCTGGCAGGCCGTGATCTCACCGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGTCATATATTGCCCTTGATTATGAACAAGAGATGGAGACTTCCAAGACCAGCTCGTCCGTCGAAAAGAGCTATGAGTTGCCCGATGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTACTTTTCCAACCTTCCATGATAGGAATGGAAGCAGCAGGTATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCTCTCGCCCCTAGCAGCATGAAGATCAAGGTCGTGGCTCCACCGGAGAGAAAGTACAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 46.83 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2452256 2454833 + Tan0003505.1 Tan04g0301 748705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0301 377 SMART actin_3 7 377 IPR004000 -
Tan04g0301 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tan04g0301 377 PRINTS Actin signature 51 62 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 238 254 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 63 85 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 142 161 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 28 37 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 117 130 IPR004000 -
Tan04g0301 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tan04g0301 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Tan04g0301 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Tan04g0301 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tan04g0301 377 FunFam Actin, muscle 182 273 - -
Tan04g0301 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Tan04g0301 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Tan04g0301 377 Gene3D - 10 371 - -
Tan04g0301 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Tan04g0301 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Tan04g0301 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Tan04g0301 377 Gene3D - 140 340 - -
Tan04g0301 377 FunFam Actin, alpha skeletal muscle 331 377 - -
Tan04g0301 377 Pfam Actin 5 377 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0957 Tan-Chr3:66011105 Tan04g0301 Tan-Chr4:2452256 5.70E-216 dispersed
Tan04g0301 Tan-Chr4:2452256 Tan11g0717 Tan-Chr11:6154362 3.00E-217 dispersed
Tan04g0301 Tan-Chr4:2452256 Tan11g0716 Tan-Chr11:6154362 3.00E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0301 K10355 - csv:101220611 749.969