Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0301 ATGGCAGATTCTGAGGATATTCAGCCTCTCGTATGCGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCCTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACCTTGAAATACCCAATTGAGCATGGTATTGTTAGTAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCACCCAGTTCTCCTAACTGAGGCTCCTCTGAACCCAAAGGCTAATCGTGAGAAGATGACACAAATTATGTTTGAAACCTTCAATACTCCAGCAATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCTCTCCCACATGCCATCCTTCGTCTTGACCTGGCAGGCCGTGATCTCACCGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGTCATATATTGCCCTTGATTATGAACAAGAGATGGAGACTTCCAAGACCAGCTCGTCCGTCGAAAAGAGCTATGAGTTGCCCGATGGACAGGTGATCACCATCGGCGCAGAGAGATTCAGATGTCCCGAAGTACTTTTCCAACCTTCCATGATAGGAATGGAAGCAGCAGGTATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCTCTCGCCCCTAGCAGCATGAAGATCAAGGTCGTGGCTCCACCGGAGAGAAAGTACAGTGTCTGGATTGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 46.83 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2452256 2454833 + Tan0003505.1 Tan04g0301 748705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0301 377 SMART actin_3 7 377 IPR004000 -
Tan04g0301 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tan04g0301 377 PRINTS Actin signature 51 62 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 238 254 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 63 85 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 142 161 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 28 37 IPR004000 -
Tan04g0301 377 PRINTS Actin signature 117 130 IPR004000 -
Tan04g0301 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tan04g0301 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Tan04g0301 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Tan04g0301 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tan04g0301 377 FunFam Actin, muscle 182 273 - -
Tan04g0301 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Tan04g0301 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Tan04g0301 377 Gene3D - 10 371 - -
Tan04g0301 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Tan04g0301 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Tan04g0301 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Tan04g0301 377 Gene3D - 140 340 - -
Tan04g0301 377 FunFam Actin, alpha skeletal muscle 331 377 - -
Tan04g0301 377 Pfam Actin 5 377 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0301 K10355 - - csv:101220611 749.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0957 Tan-Chr3:66011105 Tan04g0301 Tan-Chr4:2452256 5.70E-216 dispersed
Tan04g0301 Tan-Chr4:2452256 Tan11g0717 Tan-Chr11:6154362 3.00E-217 dispersed
Tan04g0301 Tan-Chr4:2452256 Tan11g0716 Tan-Chr11:6154362 3.00E-217 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 1.1e-214 743.0
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 1.1e-214 743.0
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 3.2e-214 741.5
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.5e-213 738.0
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.5e-213 738.0
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.0e-212 734.9
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 3.9e-212 734.6
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT2G37620 96.1 1.2e-200 696.4
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 5.4e-214 740.7
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 9.2e-214 740.0
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 2.7e-213 738.4
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.8e-213 736.9
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.0e-212 736.5
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 9.5e-211 729.9
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.7e-210 727.6
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT5G59370 96.1 8.4e-199 690.3
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.4e-214 741.9
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 4.1e-214 741.1
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.2e-213 739.6
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 4.6e-213 737.6
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 2.3e-212 735.3
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 4.3e-211 731.1
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.1e-210 728.8
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G46520 95.8 2.4e-198 688.7
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 2.2e-215 745.3
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.4e-214 742.7
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.1e-214 741.1
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 5.4e-214 740.7
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.6e-213 737.6
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 3.0e-212 734.9
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G12110 96.1 4.4e-200 694.5
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.8e-209 723.8
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 6.8e-209 723.8
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.5e-208 722.6
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 2.6e-208 721.8
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 7.5e-208 720.3
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 7.5e-208 720.3
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-207 719.5
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT3G18780 92.2 7.3e-195 677.2
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 2.3e-209 725.3
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 5.2e-209 724.2
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.6e-208 721.8
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-208 721.1
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.8e-208 720.7
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 1.7e-207 719.2
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT1G49240 91.9 1.6e-194 676.0
Tan07g0882 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0883 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0884 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan07g0885 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan03g1336 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan03g1337 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Tan02g1292 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-214 741.5
Tan03g0957 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.7e-213 738.4
Tan05g0383 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.7e-213 738.4
Tan08g1503 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.7e-213 738.4
Tan04g0301 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.0e-212 736.5
Tan11g0716 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan11g0717 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan11g0718 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.6e-212 733.4
Tan05g0384 . 1 357 Cytoskeleton Gene Families AT5G09810 96.1 4.4e-200 694.5
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.5e-57 219.5
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT2G19760 76.3 4.2e-57 218.0
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.1e-56 214.2
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.2e-54 209.9
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 1.5e-57 219.5
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 6.1e-56 214.2
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT4G29350 73.7 8.9e-55 210.3
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT4G29350 70.2 1.4e-52 203.0
Tan08g0107 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 1.8e-63 239.2
Tan06g0232 . 1 131 Cytoskeleton Gene Families AT4G29340 76.1 3.9e-58 221.5
Tan08g0108 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 6.3e-56 214.2
Tan04g2694 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 3.4e-54 208.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276