Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0315 ATGGAGGGTTTTGCGAGGCTTTTTGGATTGGCAAAGCCATATGTGGTAGTTATATTTGTGCAGTTTGGTTATGCTGGAATGGCGATTCTTGCAAAGTCGGCTTTGGACAAGGGGATGAGCCAACATGTTTTTGTGGTTTATCGTCATGCTGTTGCTACTCTCGTCATTGCTCCTTTTGCCATTGTCTTTGACAGGAAGGCAAGGACAAAGATGACCTTTTCGTTGGTATGGAAGATTGTGATGCTGGGTTTATTAGAGCCCGTGATCGATCAGAACTTGTACTTCACTGGTATGAAGCTCACAACAGCAACCTTTACAGCTGCCATGTGCAATATTCTACCAGCTTTTTCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAGTATTTTGAAGAGGGGAAGCCAAGCAAAAATCCTAGGAACCATTGTGACAGTAGGAGGAGCCATGGTTATGACCTTCATAAGAGGGCCAATGTTGAATCTGCCATGGACAAAATCCAACCAGCCCTCTGCTTCTTCAGGTGGTGCTGCAAATCACCAAAGCCCACTTAAGGGCTCACTCATGATTGCAATTGGCTGCATTTGTTGGTCAGCTTTCATCACTCTTCAGGCGATTACATTGAAAGCGTACCCAGCGGAGCTGTCGCTTACGGCGTTGATATGCTTGGTGGGCACCATTGGAGGCTCTGGGGTGGCTTTGATCATGGAGAGGGGGAACCCTGCTGCTTGGGCTTTGCACTTTGACAGTCAGCTTCTGGCTGTTGTTTATACTGGAATAATATGTTCAGGAGTAACTTATTATGTTCAAGGAGTGGTGATGCAAACAAAAGGACCTGTTTTTGTGACAGCATTCAGTCCTCTGAGTATGATTCTTGTTGCAATCATGAGCTCCTTCATCTTGTCTGAGATAATGTTCTTGGGCAGGATTATTGGAGCAGTGGTCATAATCACTGGCTTGTACATGGTTTTGTGGGGCAAAAGCAAAGATCAACCTTCAGTTAAAACAGACTGTGATAAGATAACACCTTGTGAGCAACAAATGACGACGATTCAATCAAATGAAGAATTTTTGGTGCTTGATGTTGCCAAAGAGGAGAGAAATTAA 1110 44.59 MEGFARLFGLAKPYVVVIFVQFGYAGMAILAKSALDKGMSQHVFVVYRHAVATLVIAPFAIVFDRKARTKMTFSLVWKIVMLGLLEPVIDQNLYFTGMKLTTATFTAAMCNILPAFSFLMAWACRLEKVSILKRGSQAKILGTIVTVGGAMVMTFIRGPMLNLPWTKSNQPSASSGGAANHQSPLKGSLMIAIGCICWSAFITLQAITLKAYPAELSLTALICLVGTIGGSGVALIMERGNPAAWALHFDSQLLAVVYTGIICSGVTYYVQGVVMQTKGPVFVTAFSPLSMILVAIMSSFILSEIMFLGRIIGAVVIITGLYMVLWGKSKDQPSVKTDCDKITPCEQQMTTIQSNEEFLVLDVAKEERN 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2556353 2560166 + Tan0000917.1 Tan04g0315 748719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0315 369 PANTHER WAT1-RELATED PROTEIN 15 343 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Tan04g0315 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 330 - -
Tan04g0315 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Tan04g0315 369 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
Tan04g0315 369 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0990 Tan-Chr3:66319681 Tan04g0315 Tan-Chr4:2556353 7.40E-115 dispersed
Tan04g0312 Tan-Chr4:2530268 Tan04g0315 Tan-Chr4:2556353 2.50E-171 dispersed
Tan04g0313 Tan-Chr4:2530268 Tan04g0315 Tan-Chr4:2556353 4.80E-170 dispersed
Tan04g0315 Tan-Chr4:2556353 Tan11g0765 Tan-Chr11:6466453 1.20E-112 dispersed
Tan04g0314 Tan-Chr4:2530268 Tan04g0315 Tan-Chr4:2556353 5.50E-140 tandem
Tan04g0315 Tan-Chr4:2556353 Tan04g0316 Tan-Chr4:2571905 4.70E-170 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0315 - - - 0.0