Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0317 ATGTCTTTCCAGCATAAAAGCTTTTGGATACCTAGGGATGCTGGATGTTTAACTGATGGAGAGATGAACTATGATAGCTCCTCCAGAATTGAAAACAAGCGTGGCCATCAATGGTTTATGGATGGCAGTGCACCAGAGCTATTCAGTAACAAGAAGCAAGCAATAGAAACCGTAAATACTAGACCAGTTCCAGGAGTTCCACACATGAATGTTTCTCCCTGGGAAAACACTTCAAGTTTTCAGTCAGTTCCTGGGCCCTTCACTGATCGCCTATTTGGCTCAGAGCCAATACGAACTGTCAATTTGGTTGATAGAGGCATCACTGTTGGAAATGCAACTATGGACATGGGAAGGAAGGAATTCGAGAATCATTTTGCAAGCAACCCATCAGTTGGCTTGTCCATGTCTCAATCCATTGACGATTCCTCATCATGCCTCAATTTTGGTGGAATTAGAAAAGTTAAAGTCAACCAAGTCAGGGATCCTGACATTGGCATGTCTGCCTCTTTGGGGCATGCCTATAGCAGGGGTGATAATGGCACAGTTTCAATGGGTACAACATTTAACAAAAATCATGAGAATGCCATATCATTGGGCCAGACTTATAATAGTAGAGATGAGAATGGCATCTCGGTTGGCACTGCATATCACAAGACAGATGACAATTTTATTTCAATGGGTCATGCTTTCAGCAAGGGTGATGGAAATTTTATTACAATTGGTCATAACTATAGCAAGGGAGACAACAGCATCCTATCAATGAGTCAGCCTTTTGACAAGGGGGATGACTCTTTTATTTCAATGGGTCAGTCTTATGAGAAGGCAGAAGGCAATATCATTTCTTTTGGTACCTCCTACAATAAAGGGCACGAAAATTTTATCTCAATGGGGCCAACCTATAGTAAGGCTGGTGATACTTTCATTTCAATGGCTTCCTCCTATAATAAGGGAAATGATGATAGCTTATCAATGGGTCCAACCTATGACAAGGTGAACTCTGACATTGTACATGTGGGTCCTAAATATGACAAAGCAGATTCTGGTGCTGTGTCAATGGCTCACAACTATCATAAGGGTGAGAGTAATACCATATCTTTTGGAGGTTTTGATGATGAGAATGCAGCAGATAATCCTTCTGGTGGGATCATTAGCAGTTACGACTTGTTGATGGCTAATCAGGCTTCTGCCCAAGCATCAGAAGTGTCAACCCTGAGAGATTCAGTTGATCCTAACGTGGAAGTAAACATTAACAATGCCACAAAAGTTGATGTTAAAATTGACACAAGTTCCAAGAACAAAGAGCCTAGGACGACTAAGAAGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAATTATAAAAGGGACTGGATATTTGTGCAGCTGTGACAACTGCAATCATTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCATGCTGGCTGCAAAACCAAACATCCAAATAATCACATTTATTTTGAGAATGGTAAAACTATCTATGCTGTTGTTCAAGAGCTAAAGAACACCCCTCAGGAGTTGCTATTTGATGCAATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTTCGTATTTGGAAAGCATCTTATCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAATTATGCCTTCTTGA 1755 40.97 MSFQHKSFWIPRDAGCLTDGEMNYDSSSRIENKRGHQWFMDGSAPELFSNKKQAIETVNTRPVPGVPHMNVSPWENTSSFQSVPGPFTDRLFGSEPIRTVNLVDRGITVGNATMDMGRKEFENHFASNPSVGLSMSQSIDDSSSCLNFGGIRKVKVNQVRDPDIGMSASLGHAYSRGDNGTVSMGTTFNKNHENAISLGQTYNSRDENGISVGTAYHKTDDNFISMGHAFSKGDGNFITIGHNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGTSYNKGHENFISMGPTYSKAGDTFISMASSYNKGNDDSLSMGPTYDKVNSDIVHVGPKYDKADSGAVSMAHNYHKGESNTISFGGFDDENAADNPSGGIISSYDLLMANQASAQASEVSTLRDSVDPNVEVNINNATKVDVKIDTSSKNKEPRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQELLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVIMPS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2575674 2581146 - Tan0019526.1 Tan04g0317 748721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0317 584 PANTHER AUTOIMMUNE REGULATOR 6 565 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Tan04g0317 584 MobiDBLite consensus disorder prediction 427 447 - -
Tan04g0317 584 Pfam Tify domain binding domain 477 532 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0317 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0317 Tan-Chr4:2575674 Tan05g0359 Tan-Chr5:2652497 1.90E-80 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4335 . 654 1242 PHD Transcription Factor Family AT3G14980 52.1 1.1e-167 588.6
Tan01g4336 . 654 1236 PHD Transcription Factor Family AT3G14980 51.4 7.2e-164 575.9
Tan08g1981 . 18 837 PHD Transcription Factor Family AT3G53680 54.3 2.9e-252 869.0
Tan04g0317 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.3e-37 153.7
Tan05g0358 . 316 442 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0359 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0360 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44