Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0329 ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCCGCGGTGCAGCTTTCTGGTGGCAGTCGGAAATTGTTCTGGCGCTCGGCCTCATGGTCTGCGTCACGTTCCTCCCTTCACCATCCCGAAGTCAACAAAGATGGTGGAGACCCCAATGGGAATCTTGGTGATAGTAATGGACCGAGCCGGATTTTCCCCGCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCCTTACAGCCCCTGTCGATAGCCCGGCGAAGCTTGGATGAATGGCCAAAGGCGGGGTCGGACGATATAGGCGAGTGGCCGCAACCTCCTACTCCAAGTGGTAGAGGAAATGGTGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAACCCGGATAAGAATTGTGGGCTTGTGAAAAGGGATAAGATTGCTTTTTTCGACAAAGAATGTTCAAAAGTGGCAGAACATGTATATCTTGGTGGTGATGCCGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTGTTGAATTGTGTAGGTTTCGTTTGCCCGGAGTACTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCTTCTGAGGATATTACTAGTATTCTTTACGATGTTTTTGACTACTTTGAAGATGTTAGAGAGCAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCTCGGTCCACGTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTGAAGGCAGCAAGAGGTATTGCTGACCCGAATATGGGTTTTGCTTGCCAGTTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTATAGAGTTGCCCCACACTCACCATATGATCCTTTGCATCTGGTCCCCAAAATGTTGAATGATCCTTCACCCTCTGCTCTGGATTCTAGAGGTGCATTTATCATTCATATACCATCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGGGATGCAAGGGGAGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGACCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAATCTGTTACCTTTAATGGATAGGTCCAACAGTAAAATCAATCTTGGGGAATTGAAAGGTAAGCCTTACCCAGGCGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAACGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTATGCTTAGGCGTAAGTTTGCCTCTGGGAATATGAAAGATTTTGTATCAGCTCCTCGAATATCTCTCTCTAGGGTCTATTCAGACTCGTTGATGATAGTGCATTTTTCTGCAAAATCTTCATCGCCTTCTGCATTTTCTTTGTCTTCATCATCTTCTTCACCTATCTATCTTTCTCCAGACTCCCTCTCTTCTGATTCAAGTTCAAATTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCTTCTGCATCTTCACCTTCAGTTCCAGTTTCTTCATCTCTATCTAGTTTTTCTAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTGTGTCCAATGGTCCAGAAACTCGTGATGCAGTCCCTTTGGAATCAAGTTCTCATTCATTCTCATTCCCATCCAAAAAGTTCTCACCTTCTCTTGCAGAACGCAGAGGTACTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAGAGCAACAAATAGTACCTCAAGGTTTCTTGCAACTCAAGAAGATGGTAAGAGGAAAAACAAGATTTCTTGCTCTCTTAATGTATCAATTAATATGAAAAATGGGTCAGAGCCTATGGATAGGGTTGTAAATGAACAGACAAGTTCCACTCAGAATTTCAAGAATATTGAAAACGGAATGGATATAAGGGTAGGTAGTGTGGCCTCGTGTCAGCGGGAAACTCAAGTTGATGGACAATCTACTAGTTCATGGAAAAGCTATCCCAAACTTTTTGAAGAAGGCATGGTATCCACTGTGTCAAATGGGAAGCAAGATGGCGAGTTGGTCCAACCTATGGTATACTGTTGGCCGGAGTTAGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTATAGTGATTTTCTCTCCAAGTTCAAGTGAAGAGGGATAA 2340 42.95 MVGSEEDSGTSGAAVQLSGGSRKLFWRSASWSASRSSLHHPEVNKDGGDPNGNLGDSNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDRSNSKINLGELKGKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSMLRRKFASGNMKDFVSAPRISLSRVYSDSLMIVHFSAKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSNSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSNMSLISSNSSLESVSNGPETRDAVPLESSSHSFSFPSKKFSPSLAERRGTAKSLTLPTMPSKIRATNSTSRFLATQEDGKRKNKISCSLNVSINMKNGSEPMDRVVNEQTSSTQNFKNIENGMDIRVGSVASCQRETQVDGQSTSSWKSYPKLFEEGMVSTVSNGKQDGELVQPMVYCWPELEKIAAFDTSYLNSKAAIVIFSPSSSEEG 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2691300 2696842 - Tan0012927.2 Tan04g0329 748733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0329 779 MobiDBLite consensus disorder prediction 33 70 - -
Tan04g0329 779 Gene3D Severin 304 399 IPR029006 -
Tan04g0329 779 CDD DSP 154 288 - -
Tan04g0329 779 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311(InterPro)
Tan04g0329 779 MobiDBLite consensus disorder prediction 578 621 - -
Tan04g0329 779 MobiDBLite consensus disorder prediction 100 120 - -
Tan04g0329 779 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Tan04g0329 779 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0016311(InterPro)
Tan04g0329 779 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470(InterPro)
Tan04g0329 779 PANTHER MKPA PROTEIN 14 773 - -
Tan04g0329 779 SMART VILL_6 302 399 IPR007122 GO:0051015(InterPro)
Tan04g0329 779 MobiDBLite consensus disorder prediction 578 608 - -
Tan04g0329 779 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Tan04g0329 779 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311(InterPro)
Tan04g0329 779 SMART dsp_5 153 292 IPR020422 GO:0006470(InterPro)
Tan04g0329 779 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0329 Tan-Chr4:2691300 Tan04g0331 Tan-Chr4:2691756 0.00E+00 dispersed
Tan04g0328 Tan-Chr4:2691300 Tan04g0329 Tan-Chr4:2691300 0.00E+00 tandem
Tan04g0329 Tan-Chr4:2691300 Tan04g0330 Tan-Chr4:2691300 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0329 - - - 0.0