Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0347 ATGATACTCTCAGAGCCCCCAAAGAGCAATAACAAATTAATGCACATCAAAGAATTCTTCGGCTTCTCCCATTCCTCTTCATCCAAAACCCTCCACTACTTTTCTTCCTTCCCCACCCCCGCCCGCCGGACGCCGCCGCTGCCGAGTTATGACCCTTCCGAATCGGCTGCCATGGAAGAGGCCATCACAAACTCCGAACCCATCATCACGAAATGGGACCCGGATTCTTCCGAATTCAACAGAATCACCTTCCTCTTCCGCCACGGCCGAGCTGAATCCGAGGAGTTTTTGAACTCAGTCAACGGCCTCCGGCGAGCAATGGACTTTTTCATATCGGAAAATTCCACCTCCACCGTCCTCGTTCTCGCTCAAAAACTGATGCAGGCCGCAATGAGACGACTCGAGAAGGAATTTTACCAGATTTTGAGTGAGAATCGCCAGAATCTCGACCCGGAATCCATCTCCAGCCGATCCTCCGACCGGTCGACGGCCGACGGGGAAATCGGTAGGGATTCCGTCCTTGACTTCGACAGAGTCTCATCGGATTTGAAATCGATTGCGGATTGCATGATCGATGCTGGGTATGGGAAAGAGTGCGTTAAAATCTATAAAGTAATCCGAAAATCGATCGTCGATGAAACTCTGTATCGCCTCGGAACAGAGAAGTTCAAATTGTCGAGAATTCAGAGATGGAATTGGGATTCGATCGAGCACGTGGTCAAGAATTGGATGAATTCGATCAAGATCGCCGTGAATACTCTGTTTCGAGGAGAGAAAATGCTCTGTGACGATGTTTTCTCGAGATCAGAAAGAATCAGAGAATCCTGTTTTTCCGAGATCACAAAAGATGGTGCAATCACTTTGTTCAAATTCCCGGAATTGGTCGCAAAAGGAAAGAAAGATTCCGAGAAAATATTTCTGTTAATGGAGCTCTACGAGGCGAATTCCGACGTTTTGCCGGAAATCGAGGTCATATTCGACTCTGTTTCGACGTCCCCCATTAAAACGCAAGCTCAAACGTCGATGGCTAAACTCGCGGATTGTATCCGCGATATTCTGTGTGAATTCGAGTCGACGATTCAGAAAGATTCGTCCAAAACTCCGGCACCCGGCGGTGGAATCCACCCACTGACACGATCGGCGATGAACTACATCTCGTCGTTAGGAGATTATAGTGGGACCTTCTCCGACATCCTCTCCGCCGAAAACTCTCAGATTCCGGCGTCGTACATGGAAACCCGCGCCGCCGAAGACGCTCTCTCTTCGCCGGTGGCAGCGCAGCTCGGGTGGCTAATTCTAGTCCTCCTCTGCAAACTAGACACAAAAGCAGAGCTCTACAAGGACGTATCACTCTCCTATCTCTTCCTCGCCAACAACCTGAACTTCATCGTGAAGACAGTAACGGCGACGAATCTGAGGACGGTCATCGGCAGCGAGTGGGTGGCGAATCACACGAGCAAGATGAAGCTGTACGCGGCGAACTACGAAGCGACAGCGTGGAGGAGAGTGATGACGGCGCTGCCGGAGAGGGGGTCGCCGGAAGTGGGGTCGCCGGAGACGGCAAAGGAAGGGTTTAGGAAGTTCAATGCGGCATTTGAAGAGGCTTACCGGAAACAGACGTCGTGGAGAGTGGAGGATGGGAAGCTGAGAGACGAATTGAAGATGTCGATAGCGAGGAAGATGCTGCCGGTGTACAGGGAGTTTTACGAGGGGTGTGTTGAGATGGTGGGTGTAGAGAGAGGGGCTTTGAAGGGCTTTGTGAGGTTTTCTCCTGATGATTTGGGAAATTATTTGTCTGATTTGTTTCATGGGGTTTCTTCTTCTGGGAGTAGTTCTTCTTTGTCTTCCTTTAGTGGGAGTAGCCCATTTTTTACCATTTGCCGGCGTCATTCATTCCCGCCGGAAGTCTGTTACTCACCCGCCACATCCACAGTAGCTTTCCTTCCTCTTCCAGCAGCTCACCACAGCCACCTCCGTCGGGCAGCGACGGCGCTGACGTACACGCCGCCCAATTTCAATTTCAAACCGGTCGCCCTCCGTCCGCCACATCACGAAAGTCAAAAGTCAGAAACACACCCGTCGCCATGGGAGAACCTCGATTTTCAGCCGTCATTTTCCATCGATCTTAGCATCTCATCATCACCGTCTTTGCCCCAACCACCAAAGGACCCACCATCTCTCTCAGACTCTTCTCCTTTCTGCAAAACCCTAAAATCCTACGTGCTGTCATCTCCCCACGACGCGTCAAATCCCCATAGCCTTGAAATTTCAGCGCCCTTTCAGATGGAAATGGAATAG 2298 50.87 MILSEPPKSNNKLMHIKEFFGFSHSSSSKTLHYFSSFPTPARRTPPLPSYDPSESAAMEEAITNSEPIITKWDPDSSEFNRITFLFRHGRAESEEFLNSVNGLRRAMDFFISENSTSTVLVLAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSRSSDRSTADGEIGRDSVLDFDRVSSDLKSIADCMIDAGYGKECVKIYKVIRKSIVDETLYRLGTEKFKLSRIQRWNWDSIEHVVKNWMNSIKIAVNTLFRGEKMLCDDVFSRSERIRESCFSEITKDGAITLFKFPELVAKGKKDSEKIFLLMELYEANSDVLPEIEVIFDSVSTSPIKTQAQTSMAKLADCIRDILCEFESTIQKDSSKTPAPGGGIHPLTRSAMNYISSLGDYSGTFSDILSAENSQIPASYMETRAAEDALSSPVAAQLGWLILVLLCKLDTKAELYKDVSLSYLFLANNLNFIVKTVTATNLRTVIGSEWVANHTSKMKLYAANYEATAWRRVMTALPERGSPEVGSPETAKEGFRKFNAAFEEAYRKQTSWRVEDGKLRDELKMSIARKMLPVYREFYEGCVEMVGVERGALKGFVRFSPDDLGNYLSDLFHGVSSSGSSSSLSSFSGSSPFFTICRRHSFPPEVCYSPATSTVAFLPLPAAHHSHLRRAATALTYTPPNFNFKPVALRPPHHESQKSETHPSPWENLDFQPSFSIDLSISSSPSLPQPPKDPPSLSDSSPFCKTLKSYVLSSPHDASNPHSLEISAPFQMEME 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2842484 2854401 - Tan0020104.1 Tan04g0347 748751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0347 765 SUPERFAMILY Cullin repeat-like 62 603 IPR016159 -
Tan04g0347 765 Pfam Exocyst complex component Exo70 N-terminal 66 144 - -
Tan04g0347 765 Gene3D Exocyst complex component Exo70 69 611 - -
Tan04g0347 765 PANTHER EXOCYST COMPLEX PROTEIN EXO70 60 604 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan04g0347 765 MobiDBLite consensus disorder prediction 712 731 - -
Tan04g0347 765 MobiDBLite consensus disorder prediction 743 765 - -
Tan04g0347 765 Pfam Exo70 exocyst complex subunit C-terminal 241 600 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Tan04g0347 765 MobiDBLite consensus disorder prediction 676 697 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0347 Tan-Chr4:2842484 Tan05g0340 Tan-Chr5:2551565 8.80E-147 dispersed
Tan03g1000 Tan-Chr3:66417460 Tan04g0347 Tan-Chr4:2842484 1.90E-104 wgd
Tan04g0347 Tan-Chr4:2842484 Tan08g1964 Tan-Chr8:71770631 1.20E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0347 K07195 - csv:101221801 1005.36