Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0368 ATGGTATCTGAAACTTTGATGAAGATTGTATCACCCTGCTGGAAACCTTCTGTCGAAGGCGAAAATTCTAGTAGAGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCCGGCCGCCATATTAATGGAGAATTCTCGATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGCAGTCAACTTGAGTCAGGGCCACTGAGCTCATTTGAATCGGGTCCCGTTGGAACGTTTGTTGGAATATATGATGGCCACGGAGGTCCTGAAGCTGCAGAATTCATAAATGATCGTCTGTTCAATAATATGAAGAAATTGGTTCCAGAAAATCAGGGAGTATCAGCTGAAATTATTAACAAGGCATTCTTGGAGACAGAAGAGGAGTTTTTGTCTCTTGTAAAGAAACATTGGCTTATTAAGCCGCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCTATCCAATTGTCGTCTGAGCACAATGCAAGTATTGAATCTGTGAGAGAGGAGTTGCACTCGTTGCATCCCAATGATCCACAGATCGTGGTGTTAAAGCACAAGGTGTGGCGTGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACCGAGTTCAACCGAGAGCCTCTTTTGCCGAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTTAAAGCGGAGCCTGCTATCGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTTGACATTGTCCATAGTTGTCCGCGTAATGGGATTGCAAAGAAACTTGTTAAAGCTGCTCTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACACAGACTTGAAGAAGATCGACCGCGGGGTAAGAAGACATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTCGATTCGCATCTGATTAGTCGCAGTCCGAGCTACGGACCGATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1155 43.2 MVSETLMKIVSPCWKPSVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKKLVPENQGVSAEIINKAFLETEEEFLSLVKKHWLIKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGIAKKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3060649 3065192 + Tan0018571.2 Tan04g0368 748772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0368 384 Gene3D - 39 365 IPR036457 -
Tan04g0368 384 Pfam Protein phosphatase 2C 81 326 IPR001932 -
Tan04g0368 384 PANTHER PROTEIN PHOSPHATASE 42 356 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan04g0368 384 FunFam Phosphatase 2C family protein 38 367 - -
Tan04g0368 384 CDD PP2Cc 50 357 IPR001932 -
Tan04g0368 384 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Tan04g0368 384 SMART PP2C_4 41 355 IPR001932 -
Tan04g0368 384 ProSiteProfiles PPM-type phosphatase domain profile. 49 357 IPR001932 -
Tan04g0368 384 SUPERFAMILY PP2C-like 58 358 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0366 Tan-Chr4:3060605 Tan04g0368 Tan-Chr4:3060649 9.30E-222 dispersed
Tan04g0368 Tan-Chr4:3060649 Tan08g1951 Tan-Chr8:71647066 2.10E-149 dispersed
Tan04g0367 Tan-Chr4:3060649 Tan04g0368 Tan-Chr4:3060649 2.00E-219 tandem
Tan04g0368 Tan-Chr4:3060649 Tan04g0369 Tan-Chr4:3060649 1.90E-219 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0368 K01102 - csv:101220760 735.332