Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0368 | ATGGTATCTGAAACTTTGATGAAGATTGTATCACCCTGCTGGAAACCTTCTGTCGAAGGCGAAAATTCTAGTAGAGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCCGGCCGCCATATTAATGGAGAATTCTCGATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGCAGTCAACTTGAGTCAGGGCCACTGAGCTCATTTGAATCGGGTCCCGTTGGAACGTTTGTTGGAATATATGATGGCCACGGAGGTCCTGAAGCTGCAGAATTCATAAATGATCGTCTGTTCAATAATATGAAGAAATTGGTTCCAGAAAATCAGGGAGTATCAGCTGAAATTATTAACAAGGCATTCTTGGAGACAGAAGAGGAGTTTTTGTCTCTTGTAAAGAAACATTGGCTTATTAAGCCGCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCTATCCAATTGTCGTCTGAGCACAATGCAAGTATTGAATCTGTGAGAGAGGAGTTGCACTCGTTGCATCCCAATGATCCACAGATCGTGGTGTTAAAGCACAAGGTGTGGCGTGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACCGAGTTCAACCGAGAGCCTCTTTTGCCGAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTTAAAGCGGAGCCTGCTATCGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTTGACATTGTCCATAGTTGTCCGCGTAATGGGATTGCAAAGAAACTTGTTAAAGCTGCTCTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACACAGACTTGAAGAAGATCGACCGCGGGGTAAGAAGACATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTCGATTCGCATCTGATTAGTCGCAGTCCGAGCTACGGACCGATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG | 1155 | 43.2 | MVSETLMKIVSPCWKPSVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKKLVPENQGVSAEIINKAFLETEEEFLSLVKKHWLIKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGIAKKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3060649 | 3065192 | + | Tan0018571.2 | Tan04g0368 | 748772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0368 | 384 | Gene3D | - | 39 | 365 | IPR036457 | - | |
Tan04g0368 | 384 | Pfam | Protein phosphatase 2C | 81 | 326 | IPR001932 | - | |
Tan04g0368 | 384 | PANTHER | PROTEIN PHOSPHATASE | 42 | 356 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Tan04g0368 | 384 | FunFam | Phosphatase 2C family protein | 38 | 367 | - | - | |
Tan04g0368 | 384 | CDD | PP2Cc | 50 | 357 | IPR001932 | - | |
Tan04g0368 | 384 | ProSitePatterns | PPM-type phosphatase domain signature. | 83 | 91 | IPR000222 | GO:0043169(InterPro) | |
Tan04g0368 | 384 | SMART | PP2C_4 | 41 | 355 | IPR001932 | - | |
Tan04g0368 | 384 | ProSiteProfiles | PPM-type phosphatase domain profile. | 49 | 357 | IPR001932 | - | |
Tan04g0368 | 384 | SUPERFAMILY | PP2C-like | 58 | 358 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0366 | Tan-Chr4:3060605 | Tan04g0368 | Tan-Chr4:3060649 | 9.30E-222 | dispersed | |
Tan04g0368 | Tan-Chr4:3060649 | Tan08g1951 | Tan-Chr8:71647066 | 2.10E-149 | dispersed | |
Tan04g0367 | Tan-Chr4:3060649 | Tan04g0368 | Tan-Chr4:3060649 | 2.00E-219 | tandem | |
Tan04g0368 | Tan-Chr4:3060649 | Tan04g0369 | Tan-Chr4:3060649 | 1.90E-219 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0368 | K01102 | - | csv:101220760 | 735.332 |