Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0382 ATGTTGGATCTTAACGATTCGGTTTTGAACTGCGACGAAACGACGGCGAACCGGATTGCAATGGAAGATTCCGAGACTTCGAATTCCTCCGTCGTGAATGCCGACGAGGTCTGCAACAGCAGGGACGAAGACTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAATTCCGGCAGCGGAGGCGGCGGCGCGTCGCCGGATTTGGTAACCCATGCGCTTTTTCCGGTGGCCGGAGGGTGGGGCGAAACTGAGTCTCCGGTGCCGAGGACCCATTGGTTGAACCTGTCGTCGACGGCGGATTCCGGCGTTGGAGACGGCGGCGGGGGACCGGCGGAGCTGAAAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGTCGCCGTGGGCCGCGGTCCCGGAGCTCGCAGTACCGGGGAGTTACTTTTTACCGGCGGACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTCGACACTGCCCATGCTGCGGCAAGGGCTTACGATCGAGCAGCAATAAAGTTTAGGGGAGTAGATGCAGACATAAACTTCAACCTAAATGATTACGATGAAGATATGAAACAAATGAAGAATTTGAGCAAAGAAGAATTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAGTTAAGAGGATTGTCTCTTCAAAAATATGGAAAATGGGAAGCTCAAATGAACCAAATCATGGGAAAGAATGGAATTGAGCAGAGGTCTTATAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATTTGAGCATTGGAGGCATTTTCAACTACCATTTAAGTAATTCTTCACAAAAACCCATCATTGAAAGGCCAAAGAATGAAAACAATGGTTGTGTAAATGGAGTGGGTGGACAACAAGCTTATATTCCTCCTCCTGTTTGGTCTGGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGAAAGAGGGAGAGAGAAGAGAAACAACGACTCCACAAAAATCCTTACGAATTTGGGATGGCAAATGCCAACGTCAACATCAACGTCAACGTCAATGTTAATGCCAATGCCAATGCCAATTCAAAGAAATGCGAGTAATGAAATAAGAGCAAGAGAAGAATTAGCTCATGTTTCCAAGAGTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCCATTTATGCCCAAAACAACACTGCCCTCCACAATAATACTCTCTGCCTTCCAAAACCTTCCACCAACATTTCTTGA 1302 46.47 MLDLNDSVLNCDETTANRIAMEDSETSNSSVVNADEVCNSRDEDSSVLIFDILKRENSGSGGGGASPDLVTHALFPVAGGWGETESPVPRTHWLNLSSTADSGVGDGGGGPAELKIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLNDYDEDMKQMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGKWEAQMNQIMGKNGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHLSNSSQKPIIERPKNENNGCVNGVGGQQAYIPPPVWSGFYSGFLADNEERGREKRNNDSTKILTNLGWQMPTSTSTSTSMLMPMPMPIQRNASNEIRAREELAHVSKSAASSGFSSSSNFGSIYAQNNTALHNNTLCLPKPSTNIS 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3195161 3199449 + Tan0011402.1 Tan04g0382 748786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0382 433 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0382 433 CDD AP2 137 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0382 433 SMART rav1_2 137 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0382 433 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 26 257 - -
Tan04g0382 433 Pfam AP2 domain 137 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0382 433 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0382 433 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677(InterPro)
Tan04g0382 433 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
Tan04g0382 433 MobiDBLite consensus disorder prediction 86 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0382 Tan-Chr4:3195161 Tan05g0302 Tan-Chr5:2284898 4.30E-74 dispersed
Tan04g0382 Tan-Chr4:3195161 Tan08g1929 Tan-Chr8:71547037 2.20E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27154 PF00847 AP2 6.00E-10 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0382 K09284 - csv:101204131 597.43