Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0389 ATGGCGGAGCCTCCCACCAGTCCCGCCGCCGGCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAACACCGGCGGCGTTCGCGAGCAGGACCGCTACCTCCCGATCGCTAACATAAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCTAAGGATGCTAAGGATACCGTCCAGGAATGCGTCTCCGAATTTATTAGCTTCATCACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCGACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAGTCTGCTAAAAGAGATGCAGTTGGATCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATTAACACTCAATTCGAAGAACCAGGGTATCCTAAAGGTTATGAGTACAAATCTTCTACATGGCGGCATACATGA 546 51.47 MAEPPTSPAAGSHESGGEQSPNTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRELECDAKGSSRGGDESAKRDAVGSLPGQNSQQYMQPGALTYINTQFEEPGYPKGYEYKSSTWRHT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3218497 3223996 + Tan0006938.3 Tan04g0389 748793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0389 181 FunFam Nuclear transcription factor Y subunit B-3 21 146 - -
Tan04g0389 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Tan04g0389 181 Gene3D Histone, subunit A 21 152 IPR009072 GO:0046982(InterPro)
Tan04g0389 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 145 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan04g0389 181 MobiDBLite consensus disorder prediction 122 154 - -
Tan04g0389 181 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g0389 181 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Tan04g0389 181 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Tan04g0389 181 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Tan04g0389 181 MobiDBLite consensus disorder prediction 1 30 - -
Tan04g0389 181 MobiDBLite consensus disorder prediction 12 26 - -
Tan04g0389 181 MobiDBLite consensus disorder prediction 139 154 - -
Tan04g0389 181 SUPERFAMILY Histone-fold 29 131 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0387 Tan-Chr4:3218497 Tan04g0389 Tan-Chr4:3218497 3.30E-89 dispersed
Tan04g0389 Tan-Chr4:3218497 Tan08g1924 Tan-Chr8:71507496 3.30E-60 dispersed
Tan04g0388 Tan-Chr4:3218497 Tan04g0389 Tan-Chr4:3218497 2.30E-89 tandem
Tan04g0389 Tan-Chr4:3218497 Tan04g0390 Tan-Chr4:3218497 8.90E-90 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27157 PF00808 CBFD_NFYB_HMF 6.30E-28 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0389 K08065 - csv:101223123 300.827